Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq8913 150 2e-31 >seq8913 Length=774 Score = 150 bits (166), Expect = 2e-31 Identities = 441/667 (66%), Gaps = 38/667 (6%) Strand=Plus/Plus Query 159135 TTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGC 159194 ||||||||||||| |||| |||| | |||| || |||||| |||||| ||||||||| Sbjct 82 TTGTACTATGAAATTAAATTCAGCGTTAGAAATGGAGCCTGTTTCATGGCCAGAGTTTGC 141 Query 159195 TAACGTGCATCCACATACACCTATGATACAGACCATG-----GGTTATCAAAAAATTATA 159249 ||||| |||||| | |||| || |||| | ||||| || |||| || Sbjct 142 AAACGTCCATCCATTTGCACCGG-----CACACCAAGTTACTGGTTACAAAGAAATGATT 196 Query 159250 GATGACTTACAGAA--ATG-GTTATGTGATATCACAGGGTTTGATTCTATATCATTACAA 159306 ||| | || ||| ||| | | || || || ||||| | | ||||| ||| Sbjct 197 GAT---TCACTGAATTATGCGCTGGCAGAAATAACGCAGTTTGCTGCAGTATCAACACAG 253 Query 159307 CCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAA 159366 ||||| |||| | || |||||||| || |||| || | | | | ||||| Sbjct 254 CCTAATTCAGGTGCGTCTGGCGAGTATGCTGGTTTGTTTTGTATTC--GTA-AGTATCAA 310 Query 159367 G--GATCA-GGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACT 159423 | | ||| || | | ||||| | ||||| || ||| ||||| |||||||| Sbjct 311 GAGGCTCAAGGTCAATCCCACCGAAATATTTGTTTAATTCCATTATCAGCGCATGGAACA 370 Query 159424 AATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGAT 159483 | || ||| || || ||||| || |||||||| || ||| ||| | || ||| | Sbjct 371 ACCCCAGCAAGCGCCGTCATGGCTGGAATGAAAGTGGTCACTGTAAAGAGCGACGATCTT 430 Query 159484 GGCAACATAGACATCAAAGATCTA---GAGAAG-----AAAGCAATCATGAATACATTTG 159535 || ||||| || || | || ||| | |||| |||||| | ||| || ||| Sbjct 431 GGTAACATTGATGTCGATGACCTAAGTGCGAAGGCAGAAAAGCACAAA-GAAAAC--TTG 487 Query 159536 AACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA 159595 | || || ||| ||||||| |||||||| |||||||||||||| | ||| Sbjct 488 AG-TGCGTTG----ATGGTTACATACCCATCTACGTATGGTGTATTTGAAGAAGGCATTG 542 Query 159596 GACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATC 159655 | | || | ||||| ||| || ||||| || || ||| | || |||||||| Sbjct 543 TAGAAATTATCGATATTGTCCATAGTAACGGTGGGCAAGTCTATATGGACGGTGCAAACA 602 Query 159656 TAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAA 159715 | || || || || || || | ||| | | || |||||||| || ||||||| Sbjct 603 TGAACGCCCAAGTTGGGCTCTGCAGCCCAGGAAAAATCGGCGCAGATGTCTGCCATCTAA 662 Query 159716 ACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 | ||||| || || ||||| ||||||||||| ||||| || || || || || |||||| Sbjct 663 ATTTACACAAAACCTTCTGCATTCCACATGGCGGTGGGGGGCCGGGTGTCGGATCTATTG 722 Query 159776 GTGTAGC 159782 | || || Sbjct 723 GGGTTGC 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587984889876560