Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7946 149 1e-30 seq1170 123 6e-23 >seq7946 Length=2495 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| ||||| |||||||| |||| | || | ||| ||||| | ||||| || || || Sbjct 393 CTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAA 334 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 ||| | |||||| || ||||||||||||||||| |||||||| || |||||||| ||||| Sbjct 333 GATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTT 274 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 || ||||| || ||| || |||||||| | || || || |||||||| ||||| Sbjct 273 TTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTAC 214 Query 195129 GAACACTTGCAT 195140 ||| | |||||| Sbjct 213 GAAGATTTGCAT 202 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| ||||| |||||||| |||| | || | ||| ||||| | ||||| || || || Sbjct 165 CTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAA 106 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 ||| | |||||| || ||||||||||||||||| |||||||| || |||||||| ||||| Sbjct 105 GATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTT 46 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || ||| || |||||||| Sbjct 45 TTCGATGGTATCGCTTGGTTCTACGTCAAGGGT 13 >seq1170 Length=16159 Score = 123 bits (136), Expect = 6e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||||||||| |||||||| | ||||| | ||||||||| | ||| || || Sbjct 6748 AGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGCCCATCTTCCAACTGTTTGCC 6807 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | | |||||| ||||||||||| |||||||||||||||||| | || Sbjct 6808 CGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGAATTGCACGTTT 6867 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| ||| ||| |||| ||| || | || | | || ||||| |||||||| Sbjct 6868 GACGTCACTAATACTGTACGAAAATTCAACATATAGAGGTATGGTTTTTCCAGTCAAAGT 6927 Query 195123 TTTTAC 195128 || || Sbjct 6928 CTTGAC 6933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109353364383107