Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6191 174 1e-37 seq4933 89.7 4e-12 seq5593 87.8 1e-11 >seq6191 Length=3651 Score = 174 bits (192), Expect = 1e-37 Identities = 376/555 (68%), Gaps = 17/555 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| ||||||| || || || || || || ||||||||||| ||| |||| | Sbjct 1917 GCTGTAGGTATTGACTTGGGTACAACCTACTCTTGTGTTGGTGCCTGGAAAAACAACCAG 1858 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||||||||| || |||||||||| | || || ||||| || ||| | ||||| Sbjct 1857 GTAGAAATTATTGCAAACGATCAAGGTACTCGTACGACCCCATCGTACGTTGCCTTCACC 1798 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCA 550169 ||| |||| | ||| ||||| | || || || |||||| || || || || | | Sbjct 1797 GAATCTGAGCGTTTGATTGGTAACGCGGCGAAGAATCAAGTTTCAATG--AACCCAATGA 1740 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | ||| | || ||||| || ||||| |||||| | | |||| |||| | ||| ||| Sbjct 1739 ACACTGTATTCGATGCCAAGCGTTTGATTGGACGCAATTTTGATGACCCAGATGTACAGA 1680 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGT---TAATGTTTC---TGGAAAACCTTATA 550283 |||||||||||| ||||||||| | ||| || | | |||||||||| | Sbjct 1679 AAGATATGAAGCACTGGCCTTTC---ACTGTAAAAAAAGGGCCAAGTGGAAAACCTATGA 1623 Query 550284 TTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 | |||| | | |||| ||| ||||| | ||| |||| |||||| Sbjct 1622 TCGAAGTTCAGTACAAAGGCGAGAAGAAAGAATTTGGTGCCGAAGAAATCAGTGCTATGG 1563 Query 550344 TTTTAATGAAAATGAAACAAACAGC-CAG-TGCTTTTGTTGGTCAAGAAGTTACGGATGC 550401 | || | |||||||| || | | ||| || | |||| || ||| | || Sbjct 1562 TATTGACCAAAATGAA--AACCGTCGCAGAAGCATACCTTGGCACCGATGTTCAGTCCGC 1505 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || || || ||||| ||||| || || ||||| ||||||||||| || ||||||||||| Sbjct 1504 TGTTATCACCGTACCTGCATACTTCAACGACTCCCAACGTCAAGCAACCAAAGATGCTGG 1445 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 | || ||||| || || || | |||||||| || ||||| || || ||||| | || Sbjct 1444 AACCATCGCTGGTCTGAACGTCTTGCGTATTATTAACGAACCAACAGCAGCTGCGATCGC 1385 Query 550522 ATATGGACTTGATAA 550536 || || || || || Sbjct 1384 TTACGGTCTAGACAA 1370 >seq4933 Length=4762 Score = 89.7 bits (98), Expect = 4e-12 Identities = 282/436 (65%), Gaps = 11/436 (3%) Strand=Plus/Minus Query 368557 TTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGA 368616 ||| |||| |||||| ||| | |||||||||| | | | |||| |||||| Sbjct 3065 TTTCATAACTGGCTCGTTAATGCGCGTGATTGGTGTGTCAGTCGGAACAGGTATTGGGGT 3006 Query 368617 ACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATT 368676 || || | || |||||| || || || || || ||| ||| | || || ||| Sbjct 3005 ACACCGCTGCCGATATGGATCAGCGACGACGGCGAGGAGGCTGTGTGTGTTGGGTCGATT 2946 Query 368677 AAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGT-GATTTACATATTGATAAAAT 368735 || ||| |||| ||| | |||||| | | || ||||| || || || Sbjct 2945 GCGGAGTTGGAAGAG----CTGACGGGCAAAAAGGTTGAAGACATACATCGCGAAAATAT 2890 Query 368736 TGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGT 368795 |||| || | | |||||| || ||| |||| |||||| | | || ||| || ||| Sbjct 2889 TGATGACCTCACAATTCCGTCCAAGCAAGGCAAAGGTGTCCTACGCCGTGTTCCAGAAGT 2830 Query 368796 TTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTGA 368855 | || ||||||||||| ||| |||||| || | ||| || ||||||||||| Sbjct 2829 CCTAGACTGCTGGTTTGAGAGCGGTAGTATGCCATACGCTCAGCAGCACTATCCATTTGA 2770 Query 368856 TAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCAAT 368915 ||| | || | || ||| |||| || | || ||||| | ||||| | Sbjct 2769 GAACAAAGAAAAGTT------TGAAAAAGGTTTTCCAGCAGATTTCATTGCAGAAGGTTT 2716 Query 368916 TGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGATAA 368975 || ||||| ||||||||||| || || || | || | | || ||| | || ||||| Sbjct 2715 GGACCAAACCCGTGGTTGGTTCTACACGTTAATGGTCATCGCTACTGCTCTCTTTGATAA 2656 Query 368976 ACCGGCTTTTAAAAAT 368991 || |||||||| ||| Sbjct 2655 GCCTGCTTTTAAGAAT 2640 >seq5593 Length=4069 Score = 87.8 bits (96), Expect = 1e-11 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||||||||| || | ||| | || || ||||| | | | || || || ||| Sbjct 3255 AAAATGAAACAAATCGCAGAAACATTTTTAGGGCACGAAGTCAAGAAGGCTGTCATCACT 3196 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || |||||||| | ||| ||||| || ||| || || || || || |||||| Sbjct 3195 GTTCCTGCATATTTCAGTGATTCACAGCGGGCAGCAACAAAGGACGCAGGTGCCATTGCT 3136 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| | || | ||||| ||||| || || ||||| || ||| | || ||||| || Sbjct 3135 GGCCTTGAAGTCATGCGTATCATCAACGAGCCAACTGCGGCGGCATTGGCTTATGGTCTA 3076 Query 550532 GAT 550534 ||| Sbjct 3075 GAT 3073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028818928835290