Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7946 134 1e-26 seq1156 114 1e-20 seq1170 105 5e-18 seq8132 96.9 3e-15 >seq7946 Length=2495 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| || || | ||||| || | ||| | || ||||| |||||||| |||| Sbjct 428 CCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGAC 369 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || ||||||||||| || ||||| ||||| || || ||||| || ||| Sbjct 368 AATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 309 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||| || ||||| || || |||| | || || | ||| || Sbjct 308 ATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACG 249 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| ||||| ||||| ||||| ||||| || || ||||| Sbjct 248 TCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||| || | ||||| || | ||| | || ||||| |||||||| |||| Sbjct 200 CCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGAC 141 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || ||||||||||| || ||||| ||||| || || ||||| || ||| Sbjct 140 AATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 81 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||| || ||||| || || |||| | || || | ||| || Sbjct 80 ATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACG 21 Query 101423 TCAAGAGTGACCGTTTTGCC 101442 ||||| |||| ||||| || Sbjct 20 TCAAGGGTGATGGTTTTACC 1 >seq1156 Length=16538 Score = 114 bits (126), Expect = 1e-20 Identities = 177/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 ||| |||||||| |||||||| | |||||||| ||| ||||| || | | |||||| Sbjct 3523 ATTAAATTTTCGCTTACAACCAGCGTGATTCATGTATCGAATTTTCCCGAAAACTGGTCG 3464 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCC-GCATATTGACCACATGCAACCGGCATAACCGT 13769 ||| |||| | ||||||| || ||| || | ||| ||| || |||||||| | Sbjct 3463 TTCCCTCCAACCTTGATCGTGCAAACCTGCA-ATAGCCCATGCGCATCCAGCATAACCAT 3405 Query 13770 TGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCA 13829 | || || || || || | || |||||||| || | || || || | ||| || Sbjct 3404 TCGGGTCCCGGCCGTCTAGGCTATATTTGTCATTCAGGTAAATTGCAGTCTCTAACGCTT 3345 Query 13830 CTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGT 13889 || ||||| | ||||| || | ||||||||||||||||| || | |||| | || | Sbjct 3344 CTTCGGGCGACTTCGACCACTCCAGAATTTTTTTAGCCCAATACATCCGCATAAAACCAT 3285 Query 13890 GCATTTTGCC 13899 |||||||||| Sbjct 3284 GCATTTTGCC 3275 >seq1170 Length=16159 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||| | || ||||||||| | || ||||||||||| || |||||||| | Sbjct 6719 CCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGAC 6778 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||| || || || || |||||||| | |||||||| || ||| Sbjct 6779 AGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGA 6838 Query 101363 ATGCCTTCTTTATCTTGAATT 101383 || |||||||| ||||||||| Sbjct 6839 ATTCCTTCTTTGTCTTGAATT 6859 >seq8132 Length=838 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| |||||||| |||||||| | ||| ||||| || || | |||||| Sbjct 136 CCACCTCTCAAACGTAACACTAAATGTACTGTATCTTCTTGCTGGATTTGGTAATCAAGT 77 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| || || |||| |||| ||||||||||||||||||| Sbjct 76 AATGTGCGTCCATCCTCCAATTGTTTCCCATCAAAGATCACACGCTGTTGATCGGGCGGA 17 Query 101363 ATGCCTTCTTT 101373 || |||||||| Sbjct 16 ATACCTTCTTT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396234831790497