Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6191 217 1e-50 seq7946 125 5e-23 seq5593 96.9 2e-14 >seq6191 Length=3651 Score = 217 bits (240), Expect = 1e-50 Identities = 420/607 (69%), Gaps = 21/607 (3%) Strand=Plus/Minus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 ||||| | |||||||| || || || || ||| |||||| | || ||| |||| Sbjct 1920 ATTGCTGTAGGTATTGACTTGGGTACAACCTACTCTTGTGTTGGTGCCTGGAAAAACAAC 1861 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 | |||||||| ||||| || || ||||||| | | || || ||||| || ||| | || Sbjct 1860 CAGGTAGAAATTATTGCAAACGATCAAGGTACTCGTACGACCCCATCGTACGTTGCCTTC 1801 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || ||| |||| | | | ||||| | || || || |||||| | || || || | Sbjct 1800 ACCGAATCTGAGCGTTTGATTGGTAACGCGGCGAAGAATCAAGTTTCAATGAACCCAATG 1741 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || ||| | || ||||| || | |||||||| || ||||||||||| | ||| || Sbjct 1740 AACACTGTATTCGATGCCAAGCGTTTGATTGGACGCAATTTTGATGACCCAGATGTACAG 1681 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG---GTGGTAAACCATAT-AT 474621 |||||| || |||||||| | || | ||| | |||| ||||| ||| || Sbjct 1680 AAAGATATGAAGCACTGGCCTTTCACTGTAAAAAAAGGGCCAAGTGGAAAACC-TATGAT 1622 Query 474622 AGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATG 474679 |||| || |||| ||| || | ||| ||||| | ||| |||| | | ||| Sbjct 1621 CGAAGTTCAGTACAA--AGGCGAGAAGAAAGAATTTGGTGCCGAAGAAATCAGTGCTATG 1564 Query 474680 GTTTTAGCCAAAATGAAACAAACCG-CG-AGCT-CATATCTTGGACAAGAAGTAACTGAT 474736 || || ||||||||||| |||| || || |||| ||||| || || Sbjct 1563 GTATTGACCAAAATGAAA---ACCGTCGCAGAAGCATACCTTGGCACCGATGTTCAGTCC 1507 Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || || || ||||| || || || || |||||||||||||| |||||||| Sbjct 1506 GCTGTTATCACCGTACCTGCATACTTCAACGACTCCCAACGTCAAGCAACCAAAGATGCT 1447 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 |||| || || ||||| || || || ||||||||||| |||||||||||||| || | Sbjct 1446 GGAACCATCGCTGGTCTGAACGTCTTGCGTATTATTAACGAACCAACAGCAGCTGCGATC 1387 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GT 474913 ||||| ||||| || ||||| || | || ||| || ||||| ||||| || | || Sbjct 1386 GCTTACGGTCTAGACAAGAAAGGTGGCGAA-AAG--AACGTTTTGATCTTCGACTTGGGT 1330 Query 474914 GGAGGTA 474920 ||||||| Sbjct 1329 GGAGGTA 1323 >seq7946 Length=2495 Score = 125 bits (138), Expect = 5e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||||||||||||||| || | ||||| ||||| |||||||| ||||||||| Sbjct 356 TCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTG 297 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| |||||||| || || ||| || ||||| | || |||||||| || Sbjct 296 TCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATG 237 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| | |||||| ||||| ||||| Sbjct 236 GTTTTACCGGTCAAAGTCTTTACGAAGATTTG 205 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||||||||||||||| || | ||||| ||||| |||||||| ||||||||| Sbjct 128 TCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTG 69 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| |||||||| || || ||| || ||||| | || |||||||| || Sbjct 68 TCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATG 9 Query 480738 GTTTTACC 480745 |||||||| Sbjct 8 GTTTTACC 1 >seq5593 Length=4069 Score = 96.9 bits (106), Expect = 2e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 ||||||||||||| ||| ||| | | || || ||||| | | || || || ||| Sbjct 3255 AAAATGAAACAAATCGCAGAAACATTTTTAGGGCACGAAGTCAAGAAGGCTGTCATCACT 3196 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||| |||||||| | |||||| || || |||||| || || || || ||||| Sbjct 3195 GTTCCTGCATATTTCAGTGATTCACAGCGGGCAGCAACAAAGGACGCAGGTGCCATTGCT 3136 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || ||| | || | ||||| || || || ||||| || || ||| | ||||||||||| Sbjct 3135 GGCCTTGAAGTCATGCGTATCATCAACGAGCCAACTGCGGCGGCATTGGCTTATGGTCTA 3076 Query 474869 GAT 474871 ||| Sbjct 3075 GAT 3073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267792245540108