Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6149 100 1e-16 >seq6149 Length=3715 Score = 100 bits (110), Expect = 1e-16 Identities = 169/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT--CATTTCT 25987 || ||| || || || || |||||||| || || || || || | ||| | ||||| Sbjct 1281 CTTCATGAACAAGTCGGGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCATTT-- 1338 Query 25988 TCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCT 26047 || | || || || || || | ||| ||||| || || | || || ||||||||||| Sbjct 1339 TCGTCCCCATGGTTTTTCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGTTCC 1398 Query 26048 AAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTT 26107 || || || || ||| ||||| | ||| || || ||||| |||||||| | ||| || Sbjct 1399 AAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTG 1458 Query 26108 TCATTGAAAACTTTCAACATTGGAACTAATCCAGTTG-AAAATCCGTTTGTGCTATGAAT 26166 |||||||| ||| | | ||| || || || | |||| ||||||| |||| | |||| Sbjct 1459 TCATTGAAGACTCTTAGCATAGGTAC-GATGCCGTTGCTTGATCCGTTCGTGCCACGAAT 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253012179912575