Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6149 143 3e-29 >seq6149 Length=3715 Score = 143 bits (158), Expect = 3e-29 Identities = 555/853 (65%), Gaps = 23/853 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||||||| ||||| ||||||| ||| | |||||||| ||| || ||||| || | Sbjct 1803 CCCACAGCACATGATCATGCGTGTCTCCATCGGCATTCACAAAGAGGACATCGAGAGCGC 1744 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | || |||||| |||| | || ||||||| |||||| |||||||| | || Sbjct 1743 CATCCGTACCTACGACTTGATGAGCAAAATGATGTTCACTCACGCTACACCAACGTTGTT 1684 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || ||||| || | || || || || ||||||||| | ||| ||||| || Sbjct 1683 CAACGCCGGTACCCCGCGCCCACAATTGGCCTCGTGCTTCCTTGTTACCATGAAGGATGA 1624 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC--GCA-AATCTCAAAGTGGGC 75447 ||| ||| ||||||| || | || | | | ||| || ||| || | |||| || Sbjct 1623 CTCGATCGACGGTATTTACGACACCTTGAAGTCGTGCGCTTGCATAAGC---AAGTATGC 1567 Query 75448 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 75506 ||| || || || | |||| | | | | | | || ||||| || | Sbjct 1566 TGGTGGCATCGGCCTTAGTGTCCACAACATCCGTAGTACTGGTAGCTAC-ATTCGTGGCA 1508 Query 75507 CAAATGG-TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 | || || |||| || | || || | || ||||| | || || || | ||| || ||| Sbjct 1507 CGAACGGATCAAGCA-ACGGCATCGTACCTATGCTAAGAGTCTTCAATGACACCGCACGC 1449 Query 75566 TATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 || ||| | |||| |||||| | |||| ||||| |||| | |||||||||||||| Sbjct 1448 TACGTAGACCAAG-GGGGCGGCAAACGCAAAGGGTCTTTCGCCATTTACTTGGAACCATG 1390 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| | || || | || ||| | || || | || ||||| || |||||| | || | Sbjct 1389 GCATTCGGACGTCTTCGAATTCTTGGATTTGAAGA-AAAACCATGGGGACGAAAATGCCC 1331 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | || | || | || ||||||| || ||| | ||||||||||| || | | Sbjct 1330 GCGCGCGTGACTTGTTCTACGCCATGTGGATACCCGACTTGTTCATGAAGCGTGTACAAG 1271 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 | | |||||| | || || || || || || | ||| | ||| || || Sbjct 1270 CAGATAAGCAATGGACCCTATTTTGCCCGAACGTAGCGCGTGGTTTGCACGATACGTGGG 1211 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTAGAGCCAATGCGACT 75859 | |||||||| ||| | | ||| |||||| | |||| ||||| | | | ||| Sbjct 1210 GCGAGGAGTTCGAAACTTTGTACGAAAAGTACG-AGAGCGAGGGCAAGGGCTTCAGGACC 1152 Query 75860 GTACCAGCCGCCGATGTTTGG--AAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 || | || || | ||| | || || || ||| || || |||||||| | Sbjct 1151 GTTCGTGCGCAAGAGTTGTGGTTCAAAATAATCGAAAGTCA-AG-TTGAAACTGGAACCC 1094 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 |||| ||||||||||| || || || ||| || |||||| | || ||||| || | Sbjct 1093 CATACATGCTTTACAAAGACGCGTGCAACCGTAAATCCAACCAACAAAACTTGGGCACCA 1034 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 | || || ||| | ||||| ||||| | |||||||| | ||||| | || | Sbjct 1033 TTAAAAGTAGCAATTTGTGCACTGAAATCATCGAGTACACCGCACCTGATGAAATCGCAG 974 Query 76038 TTTGCAATTTGGC 76050 |||| || ||||| Sbjct 973 TTTGTAACTTGGC 961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596502329320480