Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2396 114 2e-20 seq2364 114 2e-20 >seq2396 Length=9064 Score = 114 bits (126), Expect = 2e-20 Identities = 228/331 (69%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 181237 CTGGTGACATTACAAAAATGAAACAGCATGGTGGCAAAGCACTTACCAGATTTACCATCG 181296 ||||||| ||| ||| |||| | |||||||| |||||| | || ||| || | Sbjct 783 CTGGTGATTTTAGAAACATGAGAGTTCATGGTGGAAAAGCATTAACTGCATTAACTGTAA 842 Query 181297 GTGACATTAAAAAATTACAACATGATGACAGATCAATG--TCTGACGATCAGTGGATTAA 181354 | || || | |||||| ||||||| || | | | ||| || |||||| || | Sbjct 843 GAGAGGTTCTTGATTTACAATATGATGATAGGACTCTTAATATGA-GA-CAGTGGGTTGA 900 Query 181355 TGCTGGTAAGTTACATGCTGTAGGTAGATATCAGTTTATTGGTAATACATTACCTGGCGT 181414 || || | ||||||||||| ||||||| ||| ||| ||| |||||||| || | Sbjct 901 CCAAGGAAAACTTCATGCTGTAGGACGATATCAATTTGTTGCTAACACATTACCAGGAAT 960 Query 181415 TGCTAAGAGAGCAGG---TCTTAAAGATTCTGATCTATTCAGTGAAAAGAATCAGGATAT 181471 || | | |||||||| || |||||| || ||| || | ||||| || ||||| Sbjct 961 TGTTGACAGAGCAGGTGTTCCTAAAGA---TGCTCTCTTTGATAAAAAGGTGCAAGATAT 1017 Query 181472 AATGGCAATTCAATTAATGAAGGAACGTGGTATTTCACCATGGGTAGGTCCGAGTGATAA 181531 | ||| |||| |||||||||||||||||||| || |||||||| || || ||| Sbjct 1018 TCTTGCACTTCAGTTAATGAAGGAACGTGGTATCAATCCTTGGGTAGGACCTAGGATTAA 1077 Query 181532 AGCA--ACTAAAGAAGAAAGAGCAATTGTTG 181560 ||| || | | ||||| || ||||||| Sbjct 1078 GGCATTACCACATGAGAAACAG--ATTGTTG 1106 >seq2364 Length=9478 Score = 114 bits (126), Expect = 2e-20 Identities = 228/331 (69%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 181237 CTGGTGACATTACAAAAATGAAACAGCATGGTGGCAAAGCACTTACCAGATTTACCATCG 181296 ||||||| ||| ||| |||| | |||||||| |||||| | || ||| || | Sbjct 1197 CTGGTGATTTTAGAAACATGAGAGTTCATGGTGGAAAAGCATTAACTGCATTAACTGTAA 1256 Query 181297 GTGACATTAAAAAATTACAACATGATGACAGATCAATG--TCTGACGATCAGTGGATTAA 181354 | || || | |||||| ||||||| || | | | ||| || |||||| || | Sbjct 1257 GAGAGGTTCTTGATTTACAATATGATGATAGGACTCTTAATATGA-GA-CAGTGGGTTGA 1314 Query 181355 TGCTGGTAAGTTACATGCTGTAGGTAGATATCAGTTTATTGGTAATACATTACCTGGCGT 181414 || || | ||||||||||| ||||||| ||| ||| ||| |||||||| || | Sbjct 1315 CCAAGGAAAACTTCATGCTGTAGGACGATATCAATTTGTTGCTAACACATTACCAGGAAT 1374 Query 181415 TGCTAAGAGAGCAGG---TCTTAAAGATTCTGATCTATTCAGTGAAAAGAATCAGGATAT 181471 || | | |||||||| || |||||| || ||| || | ||||| || ||||| Sbjct 1375 TGTTGACAGAGCAGGTGTTCCTAAAGA---TGCTCTCTTTGATAAAAAGGTGCAAGATAT 1431 Query 181472 AATGGCAATTCAATTAATGAAGGAACGTGGTATTTCACCATGGGTAGGTCCGAGTGATAA 181531 | ||| |||| |||||||||||||||||||| || |||||||| || || ||| Sbjct 1432 TCTTGCACTTCAGTTAATGAAGGAACGTGGTATCAATCCTTGGGTAGGACCTAGGATTAA 1491 Query 181532 AGCA--ACTAAAGAAGAAAGAGCAATTGTTG 181560 ||| || | | ||||| || ||||||| Sbjct 1492 GGCATTACCACATGAGAAACAG--ATTGTTG 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584769252520760