Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7946 109 1e-18 seq8132 105 1e-17 seq1170 104 5e-17 >seq7946 Length=2495 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||| || || | ||||| || || || ||||| || |||||| || || || Sbjct 429 ACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGA 370 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| || | || |||||||| || ||||||||||| |||| || ||||| || || Sbjct 369 CAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGG 310 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || | || || || || | ||| | |||||| Sbjct 309 AATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTAC 250 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| || || || || | || || ||||| Sbjct 249 GTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 104 bits (114), Expect = 5e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 192307 ATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 |||||||| | |||| || | ||||| || || || ||||| || |||||| || || Sbjct 203 ATACCACCACGTAAG-CGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTC 145 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || ||||| || | || |||||||| || ||||||||||| |||| || ||||| || Sbjct 144 GGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGG 85 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || || | || || || || | ||| | ||| Sbjct 84 AGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTC 25 Query 192486 TACTTCTAGAGTAATGGTTTTACC 192509 ||| || || || ||||||||||| Sbjct 24 TACGTCAAGGGTGATGGTTTTACC 1 >seq8132 Length=838 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| | |||||| |||||||||| ||| | |||| ||| | |||||| | Sbjct 136 CCACCTCTCAAACGTAACACTAAATGTACTGTATCTTCTTGCTGGATTTGGTAATCAAGT 77 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| ||| |||| ||||||||||| ||| ||||||| | | ||||||||| || || Sbjct 76 AATGTGCGTCCATCCTCCAATTGTTTCCCATCAAAGATCACACGCTGTTGATCGGGCGGA 17 Query 192430 ATTCCTTCTTT 192440 || |||||||| Sbjct 16 ATACCTTCTTT 6 >seq1170 Length=16159 Score = 104 bits (114), Expect = 5e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||||||||||||| | ||||| || || ||||| || | || || |||| ||| Sbjct 6737 ACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGCCCATCTTCC 6796 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || ||||| || || || || || || |||||||| || || ||||||||||| ||||| Sbjct 6797 AACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 6856 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||| | ||| || | | | ||| | || |||| || | ||||| |||||||| Sbjct 6857 ATTGCACGTTTGACGTCACTAATACTGTACGAAAATTCAACATATAGAGGTATGGTTTTT 6916 Query 192508 CCAGTTAATGTTTTAATAAATA 192529 ||||| || || || | | ||| Sbjct 6917 CCAGTCAAAGTCTTGACATATA 6938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984366212263350