Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1170 102 1e-16 seq7946 100 5e-16 >seq1170 Length=16159 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 |||||||||||||| | ||||| ||| || ||||| || | || || | || ||| Sbjct 6737 ACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGCCCATCTTCC 6796 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || ||||| || || || || || || ||||| || || || ||||||||||| ||||| Sbjct 6797 AACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 6856 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||| | ||| || | | | ||| | | || |||| || | ||||| |||||||| Sbjct 6857 ATTGCACGTTTGACGTCACTAATACTGTACGAAAATTCAACATATAGAGGTATGGTTTTT 6916 Query 172041 CCAGTTAATGTTTT 172054 ||||| || || || Sbjct 6917 CCAGTCAAAGTCTT 6930 >seq7946 Length=2495 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||| || || | ||||| || || || ||||| || ||||| || || || Sbjct 429 ACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGA 370 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || |||| |||||||| || |||||||| || |||| || || || || || Sbjct 369 CAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGG 310 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || | || || || || ||||| | |||||| Sbjct 309 AATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTAC 250 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| || || || || | ||| || ||||| Sbjct 249 GTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 171840 ATACCACCTC-TAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 |||||||| | |||| || | ||||| || || || ||||| || ||||| || || Sbjct 203 ATACCACCACGTAAG-CGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTC 145 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || |||| |||||||| || |||||||| || |||| || || || || Sbjct 144 GGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGG 85 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || ||||| || || | || || || || ||||| | ||| Sbjct 84 AGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTC 25 Query 172019 TACTTCTAGAGTAATGGTTTTACC 172042 ||| || || || ||||||||||| Sbjct 24 TACGTCAAGGGTGATGGTTTTACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905033934601800