Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6149 183 3e-41 seq7946 125 6e-24 seq1170 105 6e-18 >seq6149 Length=3715 Score = 183 bits (202), Expect = 3e-41 Identities = 998/1558 (64%), Gaps = 67/1558 (4%) Strand=Plus/Plus Query 138469 TTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATG-ACCTGAAATTCACCGGCCAA 138527 |||| ||| |||||||| || | || || | |||| | | |||| |||||| || | Sbjct 343 TTCAGCTTAATCAAGTCTTTCAACAAATGTTTGTTCACACAGGTGAA-TTCACCAGCAAG 401 Query 138528 TACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAAT 138587 || || ||| ||| |||||| |||| ||||||| || | ||||| || |||| ||| Sbjct 402 GACCCGGCGATTGTACATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTATTGCCCATAAT 461 Query 138588 CTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAG 138647 || | || | ||||| ||||| || ||||| | ||| || |||| ||||| | Sbjct 462 TTGCGAGGTTGATGCGGTTGGCATTGGTGCAACCAACAAAGAGTTGCGTACTCCGTGTTG 521 Query 138648 CTTGAT-TCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACA 138706 ||||| | | | | || | ||| ||||| || |||| | | ||||| Sbjct 522 TTTGATGTTGGCACGT-AGTTCAGCCCAATCCCATCGGTCAGAAGGTGTAACGCCCCACA 580 Query 138707 TATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAA 138766 |||| || || || || ||| | |||||||| ||||||| | ||| || | Sbjct 581 TATCTGGTTGCAAGATGCCTTTACTGACTGGACTGCCCTCGTACGTCTTGTACGGTCCGA 640 Query 138767 ACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCT 138826 || || ||| ||| | || | || | ||||||| || ||| ||| | Sbjct 641 ACCTTTTCGCTTCTTCGCAGGAAGCGGTCAAAGCGGCGAAGTAAATGGTCTCGAAAATAT 700 Query 138827 GCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGT 138886 | || ||| ||| | | || ||| |||||||||| | ||| |||| |||| Sbjct 701 CTTTGTTTAGCTGCAAGGCTGCTTCACTTTCGAACGGCATGCGCATCATGATGAATGCGT 760 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 | || | ||||| ||||||| || | || || || | || || || | || Sbjct 761 CAGCTAAACCTTGTACGCCCAAACCAATTGGACGGTGTCTCAAGTTGGAGTACTCAGCTT 820 Query 138947 CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATT--TCGCACGACCACCTT 139004 ||| | || || ||||| ||||| || | ||| || || ||| | || ||| Sbjct 821 CTTTTACTGGGTAGTAGTTGACATCAATTACACGGTTCAAGTTGATCGTA--ACTTGCTT 878 Query 139005 AGTCG-TAT------GC-TTTAATCGTTCAAAA-TCGTATGTGCCCCCGTTGTCGTCGAC 139055 | || ||| || ||| ||| ||| | || ||| || ||||| | | | Sbjct 879 -GACGATATCGAAAAGCATTTGGAAGTTGTAAACTGGTTTGT--CCTCGTTG-CTTTG-- 932 Query 139056 GACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG 139115 |||||| | ||| | |||||| || | ||| || || || | ||| || || Sbjct 933 ---GTCGACCATTTTTGGAAGACAAATACTAGCCAAGTTACAAACTGCGATTTCATCAGG 989 Query 139116 GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTG 139175 || |||| |||| ||||| | |||||||| |||| || || || || || ||||| Sbjct 990 TGCGGTGTACTCGATGATTTCAGTGCACAAATTGCTACTTTTAATGGTGCCCAAGTTTTG 1049 Query 139176 TTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCAC 139235 ||| ||| ||| ||||| || || |||||||||||||| || || || |||||||| || Sbjct 1050 TTGGTTGGATTTACGGTTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAAC 1109 Query 139236 TTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGA-CGCACGTAAAG-- 139292 ||| | || || || ||||||| | | |||| || || | | ||| Sbjct 1110 TTGACTTTCGATTAT---TTTGAACCACAACT---CTTGCGCACGAACGGTCCTGAAGCC 1163 Query 139293 -TT--CGTCGCGCTCGTACTTTTCGTAGA--GTTCGTCGAA----TCGTTCACCGTAGGC 139343 || | |||| ||||||||||||||| | ||| ||||| ||| | |||| | Sbjct 1164 CTTGCCCTCGCTCTCGTACTTTTCGTACAAAGTT--TCGAACTCCTCGCCCCACGTAT-C 1220 Query 139344 GTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG-A 139402 || || | |||| || | || || | || || | |||| || || |||| | Sbjct 1221 GTGCAAACCA-CGCGCTACGT-TCGGGCAAAAT-AGGGTCCATT-GCTTATCTGCTTGTA 1276 Query 139403 CGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTAT 139462 | ||| ||||||||| || || ||||||| ||| | | ||| || ||||| || Sbjct 1277 CACGCTTCATGAACAAGTCGGGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCAT 1336 Query 139463 CTTCCGAACCCATGTTACGT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGT 139521 ||| | |||||| | | |||| | | ||| || || ||||| | ||||||||| Sbjct 1337 TTTC-GTCCCCATGGTTTTTCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGT 1395 Query 139522 TCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACA 139578 |||| || ||||| | | ||||| ||||| ||| ||||| || |||| ||| | Sbjct 1396 TCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCG 1455 Query 139579 GCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG 139638 | | |||||| || | | ||| || | | ||| | || |||||| |||| ||| Sbjct 1456 GTGTCATTGAAGACTCTTAGCATAGGTACGATGCCGTTGCTTGATCCGTTCGTGCCACGA 1515 Query 139639 ATGGGACTGTTGCGAG--CT-CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAAT 139695 ||| | | | || || |||| || || ||| | | |||||| || || || | Sbjct 1516 ATG---TAGCTACCAGTACTACGGATGTTGTGGACACTAAGGCCGATGCCACCAGCATAC 1572 Query 139696 TTGGATATTAAAACGCAATCGCGT--AATGTCTCGTATATACCTCTTATGCTGTCGTCCT 139753 ||| ||| || |||| || | || || ||||| ||||| || ||| |||| Sbjct 1573 TTGCTTATGCAAGCGCA--CGACTTCAAGGTGTCGTAAATACCGTCGATCGAGTCATCCT 1630 Query 139754 GCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAG 139813 ||| || || || ||||| || | | ||| || | || ||||| |||| | Sbjct 1631 TCATGGTAACAAGGAAGCACGAGGCCAATTGTGGGCGCGGGGTACCGGCGTTGAACAACG 1690 Query 139814 TAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCA 139873 | || | ||||| |||||||| ||| |||||| ||||| || |||||||||| Sbjct 1691 TTGGTGTAGCGTGAGTGAACATCATTTTGCTCATCAAGTCGTAGGTACGGATGGCGCTCT 1750 Query 139874 CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGG 139933 | || ||| | ||| || |||| ||||| ||||| | ||| || || || || Sbjct 1751 CGATGTCCTCTTTGTGAATGCCGATGGAGACACGCATGATCATGTGCTGTGGGCGCTCCA 1810 Query 139934 CCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 | | | || | |||||| || ||| || ||| || |||||| |||||||||| Sbjct 1811 CGATTTCCCCGTTGATTTTCAACAAATACGCGCGCTCAAGCGTCTTGAAGCCAAAGTA 1868 >seq7946 Length=2495 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||||||||| || || || || |||||| | | | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||||||||||| ||||| || ||||| ||||| Sbjct 262 GATACCATCGAAAACGTGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 321 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || || |||| || | | | |||| || || || Sbjct 322 CAACGATTGATCTTTGCTGGAAAGCAATTGGAAGACGGGCGCACATTGTCCGACTACAAT 381 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| | || | ||||| || | || | || ||||| Sbjct 382 ATCCAAAAGGAGGCAACCTTGCACTTAGTCCTTCGCCTACGAGGAGG 428 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 |||||||| || || || || |||||| | | ||| || | |||| || || |||||| Sbjct 1 GGTAAAACCATCACCCTTGACGTAGAACCAAGCGATACCATCGAAAACGTGAAGCAAAAG 60 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| || || || Sbjct 61 ATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAACGATTGATCTTTGCTGGAAAGCAA 120 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| || | | | |||| || || || || |||||||| | || | ||||| Sbjct 121 TTGGAAGACGGGCGCACATTGTCCGACTACAATATCCAAAAGGAGGCAACCTTGCACTTA 180 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 || | || || || || || Sbjct 181 GTCCTTCGCTTACGTGGTGG 200 >seq1170 Length=16159 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || ||||||||||||||||| ||||| ||||||||| | ||||| || || || |||||| Sbjct 6858 ATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGGTTGATATTCGCGGGCAAACAG 6799 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| ||| | | | |||| ||||| ||||||||||| ||||| || |||| || Sbjct 6798 TTGGAAGATGGGCGTACTCTGTCGGATTACAACATTCAAAAAGAATCAACTTTACATTTA 6739 Query 24911 GTGTTGCGATTGCGCGGAGGC 24931 || | | || ||||| ||| Sbjct 6738 GTTCTAAGGTTACGCGGCGGC 6718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449846868421880