Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1170 116 3e-21 >seq1170 Length=16159 Score = 116 bits (128), Expect = 3e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| | || ||||||||||||||||| ||||||| | || || ||| Sbjct 6734 AGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGCCCATCT 6793 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||||| || ||||||| ||||| ||||| || ||||| || ||||||||| Sbjct 6794 TCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCT 6853 Query 29695 TGTAATTTTTGTTTGACAGTTTCT-ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | | ||||||| || || | | ||| |||| ||| || | |||| ||| || Sbjct 6854 TGAATTGCACGTTTGAC-GTCACTAATACTGTACGAAAATTCAACATATAGAGGTATGGT 6912 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATA 29779 ||| ||||| || || || ||| ||| Sbjct 6913 TTTTCCAGTCAAAGTCTTGACATATA 6938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385176847676961