Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6191 203 2e-46 seq5593 105 5e-17 >seq6191 Length=3651 Score = 203 bits (224), Expect = 2e-46 Identities = 963/1497 (64%), Gaps = 50/1497 (3%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || ||||| ||| | ||| | ||||| || ||||| || ||||| | || | || ||| Sbjct 449 GTGGATTTCTCAACCGCACTGACATTTAGGATACCGTTAGCATCGATGTCGTAGGTAACT 508 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCA--GGTGGGATCCCTTCCAAATTAAATGTTCCCA 281528 || ||||| || || ||||| || ||| || || || || ||||| | |||| | |||| Sbjct 509 TCGATTTGTGGTACACCTCT-TG-GCATTGGAGGAATGCCATCCAAGTGAAATTTGCCCA 566 Query 281529 GATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAG 281588 || || || || | || ||||||||||| | |||||| || | | Sbjct 567 ACAAGTTGCAGTCCTTGGTCATCGCACGCTCACCCTCGAATACTTGGATCAATACACCTG 626 Query 281589 TTTGATTATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTT 281647 || ||||| | || || | || | | || | ||||| || | || |||||| Sbjct 627 GCTGGTTATCAGCGTATGTACTGAA-AGTTTGACTCTTTTTGGTTGGTACAGTCGTGTTT 685 Query 281648 CTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTG 281707 || | || | ||||| | |||||| || ||||| | ||||||| | || || Sbjct 686 CTCTTGATTAGCGCAGTCATGACACCACCTGCAGTTTCAATACCAAGACTCAATGGGGTT 745 Query 281708 ACATCAA-CTAGGACAATATTTTGAAGTTTTTCATCAGT-TTGACCAACA---AGAATAG 281762 ||||| | | | |||| | ||||| ||| |||| || || || |||| Sbjct 746 ACATCGAGCAACAACAAGTCGTCCAAGTTGG-----AGTCTTGAACACCACTGAGGATAG 800 Query 281763 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 281822 | ||||| | | |||||| |||||||||||||| || || || | ||| ||| | | Sbjct 801 CGGCTTGCACGGTAGCACCGTATGCAACAGCTTCGTCTGGGTTGATGCTTTTGTTTGGGT 860 Query 281823 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC--CTTAGGAATACGAGATGATCC 281880 ||| |||||||| || ||| || || || | ||| |||||||| | || Sbjct 861 CTTTGCCATTGAAGAA--TTGCTTCAACATGCTTTGCAACTTTGGAATACGTGTACTGCC 918 Query 281881 TCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTT--GAATCCAATAAAACT 281938 || || || |||| ||| | || | ||| | || | | | || || ||| Sbjct 919 ACCTACCAAAACAACTTCGTCAAC--GCGATCCTTGGAGATCTTCGCGTCACGTAGAACC 976 Query 281939 TTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTC--TGAACAAAGTTCTTCGAATTTA 281995 ||||| || || || | | || | | || |||| || || ||| ||||| | Sbjct 977 TTTTCGACTGGCTCCA-AGCACTTGCGGAAGTAGTCCATGTTCAT--TTCCTCGAAGCGA 1033 Query 281996 GCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA 282055 || | || | ||| | ||||||| || ||||| | || |||| || || ||| Sbjct 1034 GCACGCGTGATGGTGGATTGGAAATCAATGCCATCGAATAGCGAGTCAATCTCGAT-GTA 1092 Query 282056 -GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCG 282114 | ||| || |||||||| | | | || || | ||| |||| || | || | || Sbjct 1093 TGCTTGGGTAGAAGAAGACAAGGTCCTCTTTGCTCTTTCGCATGACGTGCGAAGACGACG 1152 Query 282115 TAAGGCTTTTGCTGATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACA 282172 || ||| ||| || | ||| | || | | |||||||||||| |||| Sbjct 1153 TAGGGCAC--GCTCGTTCTTGGAAAGGTCCTTCCTGTTTTTTCTCTTGAACTCTTGTTTG 1210 Query 282173 CACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 282230 | || | || | || || || |||||||| || |||| | || | |||| | Sbjct 1211 AAG--TGATCGACCATGCGGTTGTCGAAATCTTCGCCACCCAGGTGCGTGTCCCCTGCGG 1268 Query 282231 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCAC 282290 | ||| |||||| |||| |||||||| | | ||| | | ||||| || || | Sbjct 1269 TTGCTTTTACTTCAAAAATACCATCTTCGATGGTCAACAACGATACATCGAATGTACCTC 1328 Query 282291 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 282350 |||||| || || || | || ||| |||| ||| | || || ||||| || | Sbjct 1329 CACCCAAGTCGAAGATCAAAACGTTCTTTTCGCCACCTT---TCTTGTCTAGACCGTAAG 1385 Query 282351 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 282410 | | ||||| || |||||||| |||||||| | ||| || || |||||||| || ||| Sbjct 1386 CGATCGCAGCTGCTGTTGGTTCGTTAATAATACGCAAGACGTTCAGACCAGCGATGGTTC 1445 Query 282411 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 282470 | |||||||| || ||||| | ||| || ||||| || |||||||| || || ||||| | Sbjct 1446 CAGCATCTTTGGTTGCTTGACGTTGGGAGTCGTTGAAGTATGCAGGTACGGTGATAACAG 1505 Query 282471 CAT-CTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATC 282529 | ||| || || | |||| || || ||| ||||||||| | || | | Sbjct 1506 CGGACTGA-ACATCGGTGCCAAGGTATGCTTCTGCGACGGTTTTCATTTTGGTCAATACC 1564 Query 282530 ATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATA-TGATACTTCAAA 282588 || | |||| ||| | | | ||| || || || || ||| ||||| | Sbjct 1565 ATAGCACTGATTTCTTCGGCACCAAATTCTTTCTTCTCGCCTTTGTACTGA-ACTTCGAT 1623 Query 282589 -ATATGGTTT--ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTG 282645 ||| | ||| | | | || | || | || ||||| | ||||||||| || Sbjct 1624 CATAGGTTTTCCACTTGGCCCTTTTTTTACAGTGAAAGGCCAGTGCTTCATATCTTTCTG 1683 Query 282646 AACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGT 282705 ||| | |||||| ||||| | ||||| || || || ||||| || | ||| || | Sbjct 1684 TACATCTGGGTCATCAAAATTGCGTCCAATCAAACGCTTGGCATCGAATACAGTGTTCAT 1743 Query 282706 TGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAA 282765 ||| || | || | |||||| || || || | ||||||| | | || | || || || Sbjct 1744 TGGGTTCATTGAAACTTGATTCTTCGCCGCGTTACCAATCAAACGCTCAGATTCGGTGAA 1803 Query 282766 TGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACC 282825 | ||| || ||||| || || ||| |||||||||| || ||||||||||| || | Sbjct 1804 GGCAACGTACGATGGGGTCGTACGAGTACCTTGATCGTTTGCAATAATTTCTACCTGGTT 1863 Query 282826 ATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAAT 282882 |||| ||| |||| |||||| | ||||| || || |||||||| | |||||| Sbjct 1864 GTTTTTCCAGGCACCAACACAAGAGTAGGTTGTACCCAAGTCAATACCTACAGCAAT 1920 >seq5593 Length=4069 Score = 105 bits (116), Expect = 5e-17 Identities = 226/335 (67%), Gaps = 7/335 (2%) Strand=Plus/Plus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||| || || |||||||| ||||| | |||| ||| | ||||| | || | ||| | Sbjct 2923 ATTGTCGAAGTCTTCACCACCCAAATGTGTATCTCCAGCAGTAGCCTTCACCTCGAATAT 2982 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 || | |||| | ||| | | |||||| ||| || || |||| ||| || | | Sbjct 2983 GCCTTTCTCAATTGCCAAGATGGAAACATCGAAGGTACCTCCGCCCAAATCGAATACCAA 3042 Query 282310 TACATTCAT--TTCTTTGT---CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | |||| | | ||||| ||| || | ||| |||||||| || || || || ||| Sbjct 3043 AATATTCTTGGTGGTTTGTTCACTT--TTGTCATCTAGACCATAAGCCAATGCCGCCGCA 3100 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| || || || || | || || | ||| |||||||| ||||| || || || Sbjct 3101 GTTGGCTCGTTGATGATACGCATGACTTCAAGGCCAGCAATGGCACCTGCGTCCTTTGTT 3160 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 ||| | |||||||| | ||||||||||||||||| || || || | | ||||| Sbjct 3161 GCTGCCCGCTGTGAATCACTGAAATATGCAGGAACAGTGATGACAGCCTTCTTGACTTCG 3220 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 | || | | | | ||| ||||||||||||| Sbjct 3221 TGCCCTAAAAATGTTTCTGCGATTTGTTTCATTTT 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740187507022746