Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7946 150 4e-31 seq1170 100 6e-16 seq1156 84.2 4e-11 >seq7946 Length=2495 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | || || |||||||||| || | || || || ||||| || || || Sbjct 429 ACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGA 370 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | |||||||| | ||| |||||||||||||| | || ||| ||||||||||| Sbjct 369 CAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGG 310 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| |||||| || || ||||| || ||||| | |||||||| Sbjct 309 AATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTAC 250 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||| |||||||| || || ||||| Sbjct 249 GTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 122 bits (134), Expect = 2e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || |||||||||| || | || || || ||||| || || | Sbjct 202 TACCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGG 143 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| |||||||||||||| | || ||| |||||||||| Sbjct 142 ACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAG 83 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || || ||||| || ||||| | ||||||| Sbjct 82 GAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTA 23 Query 82762 CTTCCAAAGTTATCGTCTTGCC 82783 | || | || || || || || Sbjct 22 CGTCAAGGGTGATGGTTTTACC 1 >seq1170 Length=16159 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 |||||||| || | ||| |||||||| || || || ||||| || ||| | | || ||| Sbjct 6734 AGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGCCCATCT 6793 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||||| || || || || | ||||||||||||||||| |||||||| || ||| Sbjct 6794 TCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCT 6853 Query 82719 TGAAT 82723 ||||| Sbjct 6854 TGAAT 6858 >seq1156 Length=16538 Score = 84.2 bits (92), Expect = 4e-11 Identities = 191/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 198342 TGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATG 198401 ||||| ||| | ||||| | ||| || || ||||||||| ||||| | | ||| Sbjct 3242 TGGAACGCAGCACAAATGGAAATGGTACATTTTGGCAAAATGCATGGTTTTATGCGGATG 3301 Query 198402 TACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGC-TTTGAGTTATAG 198460 || ||||||||||| || || || ||| | | | || ||||| || || ||| | Sbjct 3302 TATTGGGCTAAAAAAATTCTGGAGTGGTCGAAGTCGCCCGAAGAAGCGTTAGAG-ACTGC 3360 Query 198461 TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTG 198520 || || || || | || || ||||||||| ||| || || || || | || || Sbjct 3361 AATTTACCTGAATGACAAATATAGCCTAGACGGCCGGGACCCGAATGGTTATGCTGGATG 3420 Query 198521 TATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAA 198580 ||| ||||| || || || |||| || |||| ||| |||| | || ||||| Sbjct 3421 CGCATGGGCTATTGCAGGTTTGCACGATCAAGGTTGGAGGGAACGACCAGTTTTCGGGAA 3480 Query 198581 GATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 || |||| |||||| | | |||| |||| ||||||| |||| Sbjct 3481 AATTCGATACATGAATCACGCTGGTTGTAAGCGAAAATTTAATGT 3525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981713718878119