Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6149 187 2e-42 seq7946 114 1e-20 >seq6149 Length=3715 Score = 187 bits (206), Expect = 2e-42 Identities = 1115/1751 (64%), Gaps = 64/1751 (4%) Strand=Plus/Plus Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCT-T 148114 || ||||||||||| | || ||||| || || ||||| | | || | | ||| | | Sbjct 172 TGACTCTGGTCAATATATGCACCACGATCGGCAGCCATATTTAAGA-TGGTTTTTTGACT 230 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 || ||||| |||||||||||| ||| | | || | || | | | || Sbjct 231 GATTTCCCATACCGTCTTGTACAAATCTTTGTATTCTTTTGGCAAACCAGCAACGTTTTG 290 Query 148175 CACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT--ATAGGTTGAGC 148232 ||| || || | | |||| ||| || ||||| | || |||| ||| ||| ||| Sbjct 291 CACTGATCCACCATCAGCAATAATTTGGTTGCGGACAC--TCGGTGTCCATATGTTCAGC 348 Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCAC-CACCTGAAACTCGCCGGCGAGCACGCG 148291 | |||| ||| | | || || | ||||| || |||| || || || || || || Sbjct 349 TTAATCAAGTCTTTCAACAAATGTTTGTTCACACAGGTGAAT-TCACCAGCAAGGACCCG 407 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || |||| |||| || | || || || ||||||| ||||||| ||| |||| Sbjct 408 GCGATTGTACATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTATTGCCCATAATTTGCGA 467 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 ||| | ||| || ||||| || |||| || |||||||| | ||| | | ||| || Sbjct 468 GGTTGATGCGGTTGGCATTGGTGCAACCAACAAAGAGTTGCGTACTCCGTGTTGTTTGAT 527 Query 148412 TTTG-CGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 ||| | | | || | ||||| ||||| | || ||||| ||| |||||| || Sbjct 528 GTTGGCACGT-AGTTCAGCCCAATCCCATCGGTCAGAAGGTGTAACGCCCCACATATCTG 586 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||| ||||| || | || ||||||||||||| ||||||||||| | Sbjct 587 GTTGCAAGATGCCTTTACTGACTGGACTGCCCTCGTACGTCTTGTACGGTCCGAACCTTT 646 Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||| ||||||| || | ||| || ||||||| |||||| ||| | ||| Sbjct 647 TCGCTTCTTCGCAGGAAGCGGTCAAAGCGGCGAAGTAAATGGTCTCGAAAATATCTTTGT 706 Query 148591 TGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAA 148650 | ||| || || | || |||||| ||||||| |||| | | || ||||| || | Sbjct 707 TTAGCTGCAAGGCTGCTTCACTTTCGAACGGCATGCGCATCATGATGAATGCGTCAGCTA 766 Query 148651 GGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGA 148710 || |||||||||| ||||| || |||||| | | ||||||| || | | Sbjct 767 AACCTTGTACGCCCAAACCAATTGGACGGTGTCTCAAGTTGGAGTACTCAGCTTCTTTTA 826 Query 148711 GCGGATAGTGGTTGCGGTCGATGA-TCTTGTCAAGATTGCGCACCACCACCTTTGTAATT 148769 || |||| |||| || || | | ||||| ||| | || ||| || Sbjct 827 CTGGGTAGTAGTTGACATCAATTACACGGTTCAAG-TTGATCGTAACTTGCTTGACGATA 885 Query 148770 CTGCGCAGCAATTCAAAATCGT--ACTTG-TCATCTACGATGCATCGGTTCAC------- 148819 | |||| || || | || ||| | | || || ||| | ||| || Sbjct 886 TCGAAAAGCATTTGGAAGTTGTAAACTGGTTTGTCCTCGTTGCTTTGGTCGACCATTTTT 945 Query 148820 -GGCGATAGAGGCTAG----ATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 | || | | |||| || || || || | ||||| || ||| ||||||| | | Sbjct 946 GGAAGACAAATACTAGCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATG 1005 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || || | ||||| |||||| | ||| || ||||| ||| | ||| ||| || | | Sbjct 1006 ATTTCAGTGCACAAATTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGG 1065 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA-- 148992 ||||||||||| ||||| |||||||| || |||||||| || || |||| | || Sbjct 1066 TTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAACTTGACTTTCGATTATT 1125 Query 148993 -TGAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGC---GACCCTCCTGCTCG 149048 |||||| || || ||||| || || | | || | ||| ||||| |||| Sbjct 1126 TTGAACC---ACAACTCTTGCGCACGAAC--GGTCCT-GAAGCCCTTGCCCTCGCTCTCG 1179 Query 149049 TA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT 149106 || | ||| | || |||||| ||||||| | ||||| | ||| || || Sbjct 1180 TACTTTTCGTACAAAG--TTTCGAACTCCTCGCCCCACGTATCGTGCAAACC-ACGCGCT 1236 Query 149107 -TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCG 149165 || |||||| | || | ||| || || | || |||||||| |||| ||| Sbjct 1237 ACGTTCGGGCAAAATAGGGTCCATTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCG 1296 Query 149166 GGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCAT-GTTGC 149223 || | ||| | ||||| | | ||| ||||| | ||| | |||| | ||||| ||| Sbjct 1297 GGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCA-TTTTCGTC-CCCATGGTTTT 1354 Query 149224 GGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCG 149283 || | | | ||| | ||||| ||||| || || | ||| | |||| | Sbjct 1355 TCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAG 1414 Query 149284 CGCCCTTGCGCTTGCCGCCC---TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAA 149340 || ||||| ||||||||| ||||| |||| ||| | ||| || || |||| | Sbjct 1415 ACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTTA 1474 Query 149341 CCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT- 149399 ||||||| | ||||| || | ||||| || | |||| || || | || Sbjct 1475 GCATAGGTACGATGCCGTTGCTTGATCCGTTCGTGCCACGAATGTAGCTACC-AGTACTA 1533 Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTC 149458 || | ||||| || | | ||||||||| || | ||||| ||| ||||| | | Sbjct 1534 CGGATGTTGTGGACACTAAGGCCGATGCCACCAGCATACTTGCTTATGCAAGCGCACGAC 1593 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 | || || ||| || || ||||| ||| ||||||||| | || |||||||| Sbjct 1594 TTCAAG-GTGTCGTAAATACCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGA 1652 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAAT 149577 | || ||| || | || ||||| ||||| || || | ||||| || || || Sbjct 1653 GGCCAATTGTGGGCGCGGGGTACCGGCGTTGAACAACGTTGGTGTAGCGTGAGTGAACAT 1712 Query 149578 ATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGC 149637 || | |||||||| ||||| | || ||| || ||||| || || |||| Sbjct 1713 CATT-TTGCTCATCAAGTCGTAGGTACGGATGGCGCTCTCGATGTCCTCTTTGTGAATGC 1771 Query 149638 CTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTT---TGTTTCCAATTT 149694 | |||| ||| ||||| | ||| ||||| || |||||| | | || ||| |||| Sbjct 1772 CGATGGAGACACGCATGATCATGTGCTGTGGGCGCTCCACGATTTCCCCGTT---GATTT 1828 Query 149695 TGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGC 149754 | | ||| || || || || |||||| |||||||||| | | | |||||||||| Sbjct 1829 TCAACAAATACGCGCGCTCAAGCGTCTTGAAGCCAAAGTAATCGAAAGAAAAGTCGCGGG 1888 Query 149755 CGTGGTCAATG 149765 ||| ||||||| Sbjct 1889 CGTAGTCAATG 1899 >seq7946 Length=2495 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| | ||| || || |||||||| ||| || ||| | ||| || | Sbjct 407 AAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAAT 348 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | || ||||| || ||||| |||||||||||||| |||| Sbjct 347 TGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATC 288 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||| | | || | || ||| | || || ||||| | ||||| |||||| ||| Sbjct 287 TTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACCG 228 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| |||||||| || ||||| Sbjct 227 GTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| | ||| || || |||||||| ||| || ||| | ||| || | Sbjct 179 AAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAAT 120 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | || ||||| || ||||| |||||||||||||| |||| Sbjct 119 TGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATC 60 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||||| | | || | || ||| | || || ||||| | ||||| |||||| || Sbjct 59 TTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483366288262040