Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7946 140 3e-28 seq1170 84.2 2e-11 >seq7946 Length=2495 Score = 140 bits (154), Expect = 3e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| || ||||| |||| ||| || ||| |||| |||| ||||| || ||||| Sbjct 393 CTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAA 334 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || ||||| || | ||||| || |||||||| |||||||||||||| | Sbjct 333 GATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTT 274 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || ||||| | ||| || || | ||||| |||||||| |||||||| || || Sbjct 273 TTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTAC 214 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 213 GAAGATTTGCAT 202 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | || || || || || ||||||||| || ||||| |||| | Sbjct 200 CCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGAC 141 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| |||| |||| ||||| || ||||| ||||| || ||||| || | |||| Sbjct 140 AATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 81 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| |||||||||||||| || | | || ||||| | ||| || Sbjct 80 ATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACG 21 Query 35690 TCCACCGTGATCGTTTTACC 35709 || | ||||| |||||||| Sbjct 20 TCAAGGGTGATGGTTTTACC 1 >seq1170 Length=16159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || |||||||| | || |||||||| || || ||||||||||||||||| | | Sbjct 6719 CCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGAC 6778 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| | || |||| ||| || ||||| |||||||||| || || || | |||| Sbjct 6779 AGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGA 6838 Query 35630 ACGCTCTCCTTGTC 35643 | | || ||||| Sbjct 6839 ATTCCTTCTTTGTC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450742767386680