Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7946 122 9e-23 seq6149 116 4e-21 >seq7946 Length=2495 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || || | || | ||| | || | |||||||| || ||||||||| Sbjct 428 CCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGAC 369 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || | || || || ||||| ||||| || |||||||| || || Sbjct 368 AATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 309 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || ||||| || || || | || ||| | ||| ||| Sbjct 308 ATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACG 249 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||||||||| ||||| || ||||| |||||||| Sbjct 248 TCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 |||||||| || ||||||||| | ||| | ||| || | || || || ||||| Sbjct 164 TCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAG 105 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 ||||| || |||||||| || || |||||||| || ||||| || ||||| || || Sbjct 104 ATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTT 45 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || | || ||| | ||| ||||| || || ||||||||||| Sbjct 44 TCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACC 1 >seq6149 Length=3715 Score = 116 bits (128), Expect = 4e-21 Identities = 913/1449 (63%), Gaps = 60/1449 (4%) Strand=Plus/Minus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 || ||||||||||||||||| ||| || ||| || || |||||| | |||| || Sbjct 1838 TATTTGTTGAAAATCAACGGGGAAATCGTGGAGCGCCCACAGCACATGATCATGCGTGTC 1779 Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644 | | ||||||||| || ||||| || |||| | || ||| | ||||| Sbjct 1778 TCCATCGGCATTCACAAAGAGGACATCGAGAGCGCCATCCGTACCTACGACTTGATGA-- 1721 Query 7645 TTGAAACA----GTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCC 7700 | || | ||| || |||||| | || || |||| ||| || || |||||| Sbjct 1720 --GCAAAATGATGTTCACTCACGCTACACCAACGTTGTTCAACGCCGGTACCC-CGCGCC 1664 Query 7701 T-CAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACA 7759 |||||| ||||||| || | | |||||| || ||| |||||||| |||||| Sbjct 1663 CACAATTGGCCTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGTATTTACG 1604 Query 7760 ACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAA 7819 |||| || ||||| || ||| || | || || || || || | || Sbjct 1603 ACACCTTGAAGTCGTGCGCTTGCATAAGCAAGTATGCTGGTGGCATCGGCCTTAGTGTCC 1544 Query 7820 ACGACGTGCGCGCCAACGGTAGCCGCAT-CGTGTCCACCAACGGAAAAGCCAGCGGTTTA 7878 || || | || | |||||| ||| |||| | || |||||| | || ||| | Sbjct 1543 ACAACATCCGTAGTACTGGTAGCTACATTCGTGGC-ACGAACGGATCAAGCAACGGCATC 1485 Query 7879 GAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAG 7935 | || ||| | | || |||||| || | | || | |||||||| ||||| || Sbjct 1484 GTACCTATGCTAAGAGTCTTCAATGACACCGCACGCTACGTAGACCAAGGGGGCGGCAAA 1425 Query 7936 CGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTA 7995 |||||||| | ||||| || ||||| || ||||| ||||| | | || | | | Sbjct 1424 CGCAAAGGGTCTTTCGCCATTTACTTGGAACCATGGCATTCGGACGTCTTCGAATTCTTG 1365 Query 7996 AATCTGCGTCGCAAC-ATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATT 8054 || || ||| ||||| |||| | | ||||| || | |||| || | Sbjct 1364 GATTTGAAGAAAAACCATGGGGA-CGAAAATGCCCGCGCGCGTGACTTGTTCTACGCCAT 1306 Query 8055 GTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTG 8114 |||| | ||||| |||| |||| ||| || || || |||||| | || | || Sbjct 1305 GTGGATACCCGACTTGTTCATGAAGCGTGTACAAGCAGATAAGCAATGGACCCTATTTTG 1246 Query 8115 CCCCGATCGTTGCCCTTTATT---AAAAAACGTTTACGGTTCAA--AATTTGAACAATTG 8169 ||| || ||| || | | || | | |||| || | | | || ||| ||| Sbjct 1245 CCC-GAACGTAGCGCGTGGTTTGCACGATACGT----GGGGCGAGGAGTTCGAAACTTTG 1191 Query 8170 TACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCAC 8229 ||| || | ||||| ||| ||| | | | || || |||| || || Sbjct 1190 TACGAAAAGTACGAGAGCGAGGGCAAGGGCTTCAGGACCGTTCGTGCGCAAGAGTTGTGG 1131 Query 8230 CGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCT 8289 | || |||||| ||||| ||||| || | || |||||||| ||||||||||| Sbjct 1130 TTCAAAATAATCGAAAGTCAAGTTGAAACTGGAACCCCATACATGCTTTACAAAGACGCG 1071 Query 8290 TGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCT 8349 |||||| ||| ||| ||| ||| ||||||||||| | |||||| ||||| || Sbjct 1070 TGCAACCGTAAATCCAACCAACAAAACTTGGGCACCATTAAAAGTAGCAATTTGTGCACT 1011 Query 8350 GAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGC--GTCGGTGT 8407 ||||| | |||||| ||| || || ||| | || ||||| || | || || ||| Sbjct 1010 GAAATCATCGAGTACACCGCACCTGATGAAATCGCAGTTTGTAACTTGGCTAGTATTTGT 951 Query 8408 GTT-TAAACGCGTTCG--TTGATCGAC--GCTCAAAC--ACTTACGACTTTGAA---CAA 8457 || ||| | ||| | | || | ||||| |||| |||| || | Sbjct 950 CTTCCAAAAATGGTCGACCAAAGCAACGAGGACAAACCAGTTTACAACTTCCAAATGCTT 891 Query 8458 TTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTT 8517 || | | || | |||||| ||| | ||| || | || | ||||||||||| | Sbjct 890 TTCGATATCGTCAAGCAAGTTACGAT---CAACTTGAACCGTGTAATTGATGTCAACTAC 834 Query 8518 TATCCCTTGGAAGAAGCGCGCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGT 8576 || || | ||||||| | ||| || ||| || | ||| | || |||| ||||||| Sbjct 833 TACCCAGTAAAAGAAGC-TGAGTACTCCAACTTGAGACACCGTCCAATTGGTTTGGGCGT 775 Query 8577 GCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAG-CGC 8635 |||||| | || ||||| || |||| ||||| | || | |||||| ||| || | Sbjct 774 ACAAGGTTTAGCTGACGCATTCATCATGATGCGCATGCCGTTCGAAAGTGAAGCAGCCTT 715 Query 8636 GCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTC 8695 ||| ||| |||| | | || || || | || | || ||| || || ||| Sbjct 714 GCA-GCTAAACAAAGATATTTTCGAGACCATTTACTTCGCCGCTTTGACCGCTTCCTGCG 656 Query 8696 AACTTGCCCGAGAA--TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGG 8753 || | ||| || || || ||||| | |||||| |||||| || | ||| || Sbjct 655 AAGAAG--CGAAAAGGTTCGGACCGTACAAGACGTACGAGGGCAGTCCAGTCAGTAAAGG 598 Query 8754 AATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTT 8813 || |||||| || |||||| || | ||||| | || || ||| | | Sbjct 597 CATCTTGCAACCAGATATGTGGGGCGTTA----CACCT-TCTGACCGATGGGATTGGGCT 543 Query 8814 GAA--ACG---CAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATG 8868 ||| ||| ||| || ||| ||| | ||||| || ||||||| || ||| Sbjct 542 GAACTACGTGCCAACATCAAACAACACGGAGTACGCAACTCTTTGTTGGTTGCACCAATG 483 Query 8869 CCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAAC 8928 || ||||| | || | ||||| ||||| || ||||| | ||| ||||| | |||| | Sbjct 482 CCAACCGCATCAACCTCGCAAATTATGGGCAATAACGAGTGCTTCGAGCCTTACACCTCC 423 Query 8929 AACGTGTAC 8937 ||| ||||| Sbjct 422 AACATGTAC 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505341410012920