Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6149 113 4e-20 seq7946 87.8 2e-12 >seq6149 Length=3715 Score = 113 bits (124), Expect = 4e-20 Identities = 320/480 (67%), Gaps = 14/480 (3%) Strand=Plus/Plus Query 131333 GCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAA 131392 |||| ||||||||||| |||| ||| || |||| | ||||| | ||||||| Sbjct 961 GCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAA 1020 Query 131393 TTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTA-GCATTCACATGGTCCTT 131451 || || || || ||||||||||| |||||||| ||| |||| | | ||| ||| || Sbjct 1021 TTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCAC-GCGTCTTT 1079 Query 131452 GTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTT 131511 ||| | |||||| || || || ||||| |||||| |||| || | | | ||| | Sbjct 1080 GTAAAGCATGTATGGGGTTCCAGTTTCAACTTGACTTTCGAT--TATTTTGAACCACAAC 1137 Query 131512 TCGAGCAGACAATTGATATTTGTA----TTGGCCGCGTTTTTCGTAATTTTCGTACAACG 131567 || || || | | | || | ||| || || | ||||| ||||||||||| | Sbjct 1138 TCTTGCGCACGAACGGT-CCTGAAGCCCTTGCCCTCG-CTCTCGTACTTTTCGTACAAAG 1195 Query 131568 TTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCG 131627 |||| || | | ||| ||| | || |||| | | || | || || | ||| | Sbjct 1196 TTTCGAACTCCTCGCCCCACGTATCGTGCAAACCACGCGCTACGTTCGGGCAAAATAGGG 1255 Query 131628 ACCACACGCCGTTCTG-TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTAC 131686 ||| || |||| || || |||||||| ||||| || || | ||| | ||||| Sbjct 1256 TCCA-TTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCGGGTATCCACATGGCGTAG 1314 Query 131687 AACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt-ttCAAATTTAAAAAGTC 131745 |||| || | || | ||| || ||||| ||||| ||||||| || || || Sbjct 1315 AACAAGTCACGCGCGCGGGCATTTTC-GTCCCCATGGTTTTTCTTCAAATCCAAGAATTC 1373 Query 131746 CAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCC 131805 || | ||||| |||||| |||||||| || | || | | |||||||| || ||||| Sbjct 1374 GAAGACGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCC 1433 >seq7946 Length=2495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 27012 TAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATT 27070 || |||||| ||||| || | || | || || || || || | || ||||| ||||| Sbjct 438 TACTTATTGACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATT 379 Query 27071 GTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130 ||||||| || ||||| ||||||| | || || || || | || | || || || Sbjct 378 GTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTG 319 Query 27131 ATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT 27190 ||| || || | || || || || |||||| | |||| | |||| | || || | Sbjct 318 ATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCT 259 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || || || | ||| || |||| ||| || || |||||||||||| Sbjct 258 TGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCATA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424887681251352