Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6149 132 6e-26 >seq6149 Length=3715 Score = 132 bits (146), Expect = 6e-26 Identities = 539/841 (64%), Gaps = 15/841 (2%) Strand=Plus/Plus Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 |||| ||||| || | | | ||||| | |||||||| || ||||| |||||||| Sbjct 961 GCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAA 1020 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838 || ||| ||||||||||||||||| | ||| || || || ||| ||||| || ||| Sbjct 1021 TTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCACGCGTCTTTG 1080 Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT--TCCAGACAT 118896 |||||||||||||| || || || || || ||||| || || | ||| | | Sbjct 1081 TAAAGCATGTATGGGGTTCCAGTTTCAACTT--GACTTTCGATTATTTTGAACCACAACT 1138 Query 118897 CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 | || | || || | | | ||||| |||||||||| ||| | | || Sbjct 1139 CTTGCGCACGAACGGTCCTGAAGCCCTTGCCCTCGCTCTCGTACTTTTCGTACAAAGTTT 1198 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 | ||||| || ||| | || | || | || | ||||| || || | || Sbjct 1199 CGAACTCCTCGCCCCACGTATCGTGCAAACCACGCGCTACGTTCGGGCAAAATAGGGTCC 1258 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 |||| | | | | || ||||||||||| | ||| || ||||| | || |||| | Sbjct 1259 ATTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCGGGTATCCACATGGCGTAGAACA 1318 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 || || ||| || | ||| ||||| || || ||| ||||| || || | || Sbjct 1319 AGTCACGCGCGCGGGCATTTTCGTCCCCATGGTTTTTCTTCAAATCCAAGAATTCGAAGA 1378 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCT 119193 |||| ||||| ||||||| ||| | |||| ||||| || || | || | | Sbjct 1379 CGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTT 1438 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| ||| || | || ||| | || || || | ||||| || | ||| || | | | Sbjct 1439 GGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTTAGCATAGGTACGATGCCGTTGCTTG 1498 Query 119254 GGCCATTTGTCCCCCGAAT-ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312 || || || || ||||| | || | | | || | ||||| | || Sbjct 1499 ATCCGTTCGTGCCACGAATGTAGCTAC-CAGTACTACGGATGTTGTGGACACTAAGGCCG 1557 Query 119313 ATACCCCCTGCCCACTTTGAGATT-TGC--GCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 || || || || |||| | || ||| |||||| | | | || |||| || || Sbjct 1558 ATGCCACCAGCATACTT---GCTTATGCAAGCGCACGACTTCAAGGTGTCGTAAATACCG 1614 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429 |||||||||||| |||| | | | |||||||| | || ||| || | || ||| Sbjct 1615 TCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGAGGCCAATTGTGGGCGCGGGGTA 1674 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAG 119489 || |||||||| | |||||||| ||||| ||||||| || | |||| ||||||| Sbjct 1675 CCGGCGTTGAACAACGTTGGTGTAGCGTGAGTGAACATCATTTTGCTCATCAAGTCGTAG 1734 Query 119490 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 119549 || | | || ||||| || |||||| ||||| ||||| ||||| | |||| Sbjct 1735 GTACGGATGGCGCTCTCGATGTCCTCTTTGTGAATGCCGATGGAGACACGCATGATCATG 1794 Query 119550 T 119550 | Sbjct 1795 T 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618365463700760