Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6149 161 1e-34 >seq6149 Length=3715 Score = 161 bits (178), Expect = 1e-34 Identities = 535/818 (65%), Gaps = 23/818 (3%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTG--ATGGTGCCGATGTTCTTCTGGTTG 79155 |||||||||||| ||||||||||| | |||| |||||||| | ||| | |||||| Sbjct 999 CTCGATGATTTCAGTGCACAAATTG--CTACTTTTAATGGTGCCCAAGTTTTGTTGGTTG 1056 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 || ||| || ||||| ||||| |||||| || || || || ||||| ||||| Sbjct 1057 GATTTACGGTTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAACTTGACTT 1116 Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA---CCCTGT 79272 | || | | ||| | || | || || ||| || || | | |||| Sbjct 1117 TCGATTATTTTGAACCACAACTCTTGCGCACG---AACGGTCCTGAAGCCCTTGCCCTCG 1173 Query 79273 GCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGG 79332 ||||| | |||||| | ||| |||| || | |||| ||| || | Sbjct 1174 CTCTCGTACTTTTCGTACAAAGTTTCGAACTCCTCGCCCCACGTATCGTGCAAACCACG- 1232 Query 79333 CACT-CGTGCGGGCACATCAGGTGCCAGTCCTCGTC--CTTCTCAACCTTCTCCATGAAG 79389 | || ||| |||||| | ||| ||| | || || ||| | || || |||||| Sbjct 1233 CGCTACGTTCGGGCAAAATAGGGTCCATTGCTTATCTGCTTGTACACG--CTTCATGAAC 1290 Query 79390 AGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACG--CATCTCCTCGTCGCCCT 79447 | ||| || ||||||| ||| ||| | ||| || || ||| | ||||| || | Sbjct 1291 AAGTCGGGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCATTT--TCGTCCCCAT 1348 Query 79448 GGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGG 79507 |||| || || | || || | || ||| | ||||| || |||| || |||| Sbjct 1349 GGTTTTTCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGTTCCAAGTAAATGG 1408 Query 79508 CGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAA 79567 |||| || || ||||| |||||||| || |||| ||||| || || |||| ||||| | Sbjct 1409 CGAAAGACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTGTCATTGAAGA 1468 Query 79568 CTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGC 79627 ||| ||||| || |||||||||| | |||||||| || || |||| Sbjct 1469 CTCTTAGCATAGGTACGATGCCGTTGCTTGATCCGTTCGTGCCACGAATGTAGCTACCAG 1528 Query 79628 TCGCCCGAATGTTCGAG-CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCG 79686 | || ||||| | || | | |||||||| || | ||||| ||| ||| Sbjct 1529 TACTACGGATGTTGTGGACACTA-AGGCCGATGCCACCAGCATACTTGCTTATGCAAGCG 1587 Query 79687 CACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAG 79746 ||| ||| | || ||||| || || ||||||||||| |||||||| | || |||||| Sbjct 1588 CACGACTTCAAGGTGTCGTAAATACCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAG 1647 Query 79747 CAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG 79806 || | || |||||| |||||||||||||| | || || || ||||| ||| Sbjct 1648 CACGAGGCCAATTGTGGGCGCGGGGTACCGGCGTTGAACAACGTTGGTGTAGCGTGAGTG 1707 Query 79807 AAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGG 79866 || | | ||| |||||||| ||||| || || ||| | || ||| || ||| Sbjct 1708 AACATCATTTTGCTCATCAAGTCGTAGGTACGGATGGCGCTCTCGATGTCCTCTTTGTGA 1767 Query 79867 ATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGGCG 79903 ||||||| | ||| ||||||| | || ||| ||||| Sbjct 1768 ATGCCGATGGAGACACGCATGATCATGTGCTGTGGGCG 1805 Score = 159 bits (176), Expect = 4e-34 Identities = 353/525 (67%), Gaps = 6/525 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||| | ||||||| || || ||| || | | | | Sbjct 1802 CCACAGCACATGATCATGCGTGTCTCCATCGGCATTCACAAAGAGGACATCGAGAGCGCC 1743 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 | || |||||| |||||||| | | | | ||||| ||||| || || || | ||| Sbjct 1742 ATCCGTACCTACGACTTGATGAGCAAAATGATGTTCACTCACGCTACACCAACGTTGTTC 1683 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||||||||| ||| || || | || ||||| || | |||||||||||| Sbjct 1682 AACGCCGGTACCCCGCGCCCACAATTGGCCTCGTGCTTCCTTGTTACCATGAAGGATGAC 1623 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || || || || ||||| || | ||| |||||| ||| ||||| | || Sbjct 1622 TCGATCGACGGTATTTACGACACCTTGAAGTCGTGCGCTTGCATAAGCAAGTATGCTGGT 1563 Query 19343 GGTATCGGGATCCACTGCTCG-AATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| | | || | || ||||| | ||||| || ||| ||||| Sbjct 1562 GGCATCGGCCTT-AGTGTCCACAACATCCGTAGTACTGGTAGCTACATTCGTGGCACGAA 1504 Query 19402 CGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 |||| | | |||| ||||| || ||||| | |||||||| |||| || | ||||| Sbjct 1503 CGGATCAAGCAACGGCATCGTACCTATGCTAAGAGTCTTCAATGACACCGCACGCTACGT 1444 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 |||| ||||||||||||||||| || || |||||||| ||| | || |||||||| | Sbjct 1443 AGACCAAGGGGGCGGCAAACGCAAAGGGTCTTTCGCCATTTACTTGGAACCATGGCATTC 1384 Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG--CGCTGT 19579 ||||||| | || ||| | || || ||||| || ||||| | ||| ||| Sbjct 1383 GGACGTCTTCGAATTCTTGGATTTGAAGAAAAACCATGGGGACGA--AAATGCCCGCGCG 1326 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 || ||| | ||| ||| ||||||| || ||| | |||||| || Sbjct 1325 CGTGACTTGTTCTACGCCATGTGGATACCCGACTTGTTCATGAAG 1281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548462946972240