Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6149 147 2e-30 >seq6149 Length=3715 Score = 147 bits (162), Expect = 2e-30 Identities = 341/504 (68%), Gaps = 10/504 (2%) Strand=Plus/Minus Query 53246 ACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCT 53305 || |||||||| |||||| ||| | || || ||||| || ||||| |||||||||| Sbjct 1736 ACCTACGACTTGATGAGCAAAATGATGTTCACTCACGCTACACCAACGTTGTTCAACGCC 1677 Query 53306 GGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 ||||| | ||| || || | |||||||| || | |||||||||||||||||| Sbjct 1676 GGTACCCCGCGCCCACAATTGGCCTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATC 1617 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 ||||| || ||||| || | ||| ||| || ||| ||||| | ||||| ||| Sbjct 1616 GACGGTATTTACGACACCTTGAAGTCGTGCGCTTGCATAAGCAAGTATGCTGGTGGCATC 1557 Query 53426 GGTATCCACTG-CTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCG 53483 || | | || | ||| ||||| | || | | || || || |||||||| Sbjct 1556 GGCCT-TAGTGTCCACAACATCCGTAGTACTGGTAGCTACATTC-GTGGCACGAACGGAT 1499 Query 53484 TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 | | || ||||| |||||||| | |||||||| |||| || || ||||| ||| Sbjct 1498 CAAGCAACGGCATCGTACCTATGCTAAGAGTCTTCAATGACACCGCACGCTACGTAGACC 1439 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 | || || || || ||||| ||||| |||||||| ||| | || || ||||| | ||| Sbjct 1438 AAGGGGGCGGCAAACGCAAAGGGTCTTTCGCCATTTACTTGGAACCATGGCATTCGGACG 1379 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACC 53663 | | || || | || || || || || |||||| | ||| |||||| Sbjct 1378 TCTTCGAATTCTTGGATTTGAAGAAAAACCATGGGGACGAAAATGCCCGCGCGCGTGACT 1319 Query 53664 TGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGG 53720 |||| ||| || ||||||| || ||| | |||||| || ||| | ||| || || Sbjct 1318 TGTTCTAC-GCCATGTGGATACCCGACTTGTTCATG--AAGCGTGTACAAGCAGATAAGC 1262 Query 53721 AGTGGTACCTGATGTGCCCGAACG 53744 | ||| ||| | |||||||||| Sbjct 1261 AATGGACCCTATTTTGCCCGAACG 1238 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||||| || | || || |||||||||||||| || || | || || ||||||| Sbjct 511 TACGCAACTCTTTGTTGGTTGCACCAATGCCAACCGCATCAACCTCGCAAATTATGGGCA 452 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 | |||||| |||||||| ||||| ||||||| ||| |||||| ||| || |||| Sbjct 451 ATAACGAGTGCTTCGAGCCTTACACCTCCAACATGTACAATCGCCGGGTCCTTGCTGGTG 392 Query 55602 AGTT 55605 | || Sbjct 391 AATT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547154294555800