Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7946 123 3e-23 >seq7946 Length=2495 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| || || || || ||||| || || || | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| || || || |||||||| || ||||||||||| ||| Sbjct 262 GATACCATCGAAAACGTGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 321 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || |||||||| |||||| | || || | || || | | ||||| ||| Sbjct 322 CAACGATTGATCTTTGCTGGAAAGCAATTGGAAGACGGGCGCACATTGTCCGACTACAAT 381 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||||||||| | || | || ||||| | || || || || || ||| Sbjct 382 ATCCAAAAGGAGGCAACCTTGCACTTAGTCCTTCGCCTACGAGGAGGTCAA 432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || || || ||||| || || || | |||| ||| | ||| ||||| || Sbjct 1 GGTAAAACCATCACCCTTGACGTAGAACCAAGCGATACCATCGAAAACGTGAAGCAAAAG 60 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || |||||||| || ||||||||||| ||||| || | || |||||||| |||||| Sbjct 61 ATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAACGATTGATCTTTGCTGGAAAGCAA 120 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || || | || || | | ||||| ||| |||||||||| | || | || || Sbjct 121 TTGGAAGACGGGCGCACATTGTCCGACTACAATATCCAAAAGGAGGCAACCTTGCACTTA 180 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 ||| | || | || ||||| Sbjct 181 GTCCTTCGCTTACGTGGTGG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570246090373520