Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1156 129 5e-25 seq7946 120 3e-22 seq1170 109 5e-19 >seq1156 Length=16538 Score = 129 bits (142), Expect = 5e-25 Identities = 208/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||| || | |||||||||||| |||||| | | | | ||||||||||| Sbjct 3227 ACGCACGAACAGTTGTGGAACGCAGCACAAATGGAAATGGTACATTTTGGCAAAATGCAT 3286 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || |||||||| ||||||||||| ||||| || |||| ||||| ||||| | ||| Sbjct 3287 GGTTTTATGCGGATGTATTGGGCTAAAAAAATTCTGGAGTGGTCGAAGTCGCCCGAAGAA 3346 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||| || | ||||| | | ||||| | || || |||| || || || | ||| Sbjct 3347 GCGTTAGAGACTGCAATTTACCTGAATGACAAATATAGCCTAGACGGCCGGGACCCGAAT 3406 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || || | || || ||| ||||| ||| | ||||||||||| |||| ||| || Sbjct 3407 GGTTATGCTGGATGCGCATGGGCTATTGCAGGTTTGCACGATCAAGGTTGGAGGGAACGA 3466 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||| || || || ||||| || ||||| | | ||||||| ||||||||||||| Sbjct 3467 CCAGTTTTCGGGAAAATTCGATACATGAATCACGCTGGTTGTAAGCGAAAATTTAATGT 3525 >seq7946 Length=2495 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||| ||||||| || | || || ||||| || ||||| | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||| || |||||||| |||||||| || || ||||| Sbjct 262 GATACCATCGAAAACGTGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 321 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || || |||||||||||| | || | ||||| ||||| Sbjct 322 CAACGATTGATCTTTGCTGGAAAGCAATTGGAAGACGGGCGCACATTGTCCGACTACAAT 381 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||| | ||||| || || || Sbjct 382 ATCCAAAAGGAGGCAACCTTGCACTTAGT 410 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || ||||| || ||||| ||| | || || | || || ||||| || |||||| Sbjct 10 ATCACCCTTGACGTAGAACCAAGCGATACCATCGAAAACGTGAAGCAAAAGATCCAAGAC 69 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || |||||||| || || ||||| || || || || | || || || |||||||||||| Sbjct 70 AAGGAAGGCATTCCTCCAGATCAGCAACGATTGATCTTTGCTGGAAAGCAATTGGAAGAC 129 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || | ||||| ||||| || ||||||||| | ||||| || || || | || Sbjct 130 GGGCGCACATTGTCCGACTACAATATCCAAAAGGAGGCAACCTTGCACTTAGTCCTTCGC 189 Query 27204 TTGCGGGGTGGCAT 27217 || || ||||| || Sbjct 190 TTACGTGGTGGTAT 203 >seq1170 Length=16159 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 ||||||| |||||||||||||||||| || || || |||||||| | || |||| | Sbjct 6870 GTCAAACGTGCAATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGGTTGATATTC 6811 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 || |||||||| |||||||| | || | || ||||||||||||||||| || || Sbjct 6810 GCGGGCAAACAGTTGGAAGATGGGCGTACTCTGTCGGATTACAACATTCAAAAAGAATCA 6751 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||| ||| | | || || || ||| Sbjct 6750 ACTTTACATTTAGTTCTAAGGTTACGCGGCGGC 6718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434869357513920