Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7946 132 1e-25 >seq7946 Length=2495 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | || | ||| |||||||| || || || | | || | || ||| Sbjct 413 AGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCT 354 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || ||||| | ||||| || || ||||||| ||||||||||| Sbjct 353 TCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCT 294 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 ||||||||||| ||||||||||||||||| || ||| ||| || || || ||||| Sbjct 293 TGGATCTTTTGCTTCACGTTTTCGATGGTATC---GCTTGGTTCTACGTCAAGGGTGATG 237 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||||||||| || | ||||| Sbjct 236 GTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 114 bits (126), Expect = 3e-20 Identities = 139/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | || | ||| |||||||| || || || | | || | || ||| Sbjct 185 AGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCT 126 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || ||||| | ||||| || || ||||||| ||||||||||| Sbjct 125 TCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCT 66 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 ||||||||||| ||||||||||||||||| || ||| ||| || || || ||||| Sbjct 65 TGGATCTTTTGCTTCACGTTTTCGATGGTATC---GCTTGGTTCTACGTCAAGGGTGATG 9 Query 211080 GTCTTTCC 211087 || || || Sbjct 8 GTTTTACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159018023400665