Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7946 141 2e-28 seq1170 87.8 4e-12 seq537 87.8 4e-12 seq536 87.8 4e-12 >seq7946 Length=2495 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || |||||||| || | || || || || |||||||| |||||||| | Sbjct 429 ACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGA 370 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || || || | ||| || || ||||||||||| ||||| || || || Sbjct 369 CAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGG 310 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||||||| || ||| | ||||| || || | ||| || Sbjct 309 AATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTAC 250 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 249 GTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | |||||| || | || || || || |||||||| |||||||| | Sbjct 201 ACCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGA 142 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || || || | ||| || || ||||||||||| ||||| || || || Sbjct 141 CAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGG 82 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||||||| || ||| | ||||| || || | ||| || Sbjct 81 AATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTAC 22 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 || || ||||| || ||||| Sbjct 21 GTCAAGGGTGATGGTTTTACC 1 >seq1170 Length=16159 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || || | |||||| || ||||||||| |||||||| || | || || || ||||| Sbjct 6734 AGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGCCCATCT 6793 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | ||||| || || || ||||| | |||||| || ||||| || || |||||| Sbjct 6794 TCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCT 6853 Query 283008 TGGATCTTTGC---TTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || || ||| ||| ||| | ||| ||| |||| ||| || | |||| || Sbjct 6854 TGAAT---TGCACGTTTGACGTCACTAATACTGTACGAAAATTCAACATATAGAGGTATG 6910 Query 283065 GTCTTACCCGTCAAAGTCTTAAC 283087 || || || ||||||||||| || Sbjct 6911 GTTTTTCCAGTCAAAGTCTTGAC 6933 >seq537 Length=27904 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||||||||| | || | ||| |||| |||| ||| || | | ||||||| Sbjct 22310 TTCCTTGTCTTCACCACCTTCGTATCTCCAGCGGATATACTCATTAGGAGACTTGTCAAG 22369 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 ||| | || || |||||||| ||||| ||||| || ||||||| ||| ||||||||| Sbjct 22370 ATGTTGTTCAATATGGTGGAATGCGTGTTGTGCTACATAAGCAAAACGGCAATTTGGATG 22429 Query 316281 CTT 316283 ||| Sbjct 22430 CTT 22432 >seq536 Length=27921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||||||||| | || | ||| |||| |||| ||| || | | ||||||| Sbjct 5612 TTCCTTGTCTTCACCACCTTCGTATCTCCAGCGGATATACTCATTAGGAGACTTGTCAAG 5553 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 ||| | || || |||||||| ||||| ||||| || ||||||| ||| ||||||||| Sbjct 5552 ATGTTGTTCAATATGGTGGAATGCGTGTTGTGCTACATAAGCAAAACGGCAATTTGGATG 5493 Query 316281 CTT 316283 ||| Sbjct 5492 CTT 5490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046618216247734