Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7946 93.3 4e-14 seq3116 86.0 6e-12 seq2395 86.0 6e-12 >seq7946 Length=2495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| || || || |||||||| | |||||| |||| || | ||||| || || || Sbjct 393 CTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAA 334 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| || || || || | |||| || |||||||| ||| |||||||||| || Sbjct 333 GATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCA-CGT 275 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | || ||||| | || || || | || || |||||||| |||| ||||||| Sbjct 274 TTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTA 215 Query 41850 CGAAAATCTGCAT 41862 |||| || ||||| Sbjct 214 CGAAGATTTGCAT 202 >seq3116 Length=7005 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 85838 TATCGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACT 85897 ||| |||||||| || || ||||||||||| ||||||||||||||||| | || || Sbjct 3199 TATTGACGTGGGTGCGGGTGTCATCGACGCGGACTACCGCGGAAACGTAGGTGTTGTTCT 3258 Query 85898 CTTCAACCACGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCAT 85957 || ||||| || || || || || | || | || || |||| ||| || || || || Sbjct 3259 ATTTAACCATGGAGATGAAGACCTAGAAGTAAAACGCGGTGACAGGGTCGCGCAATTAAT 3318 Query 85958 CTGTGAAAAAATCCACTATTCCGACATACAAGAAGTGACAACTCTGGACACCACCCAACG 86017 || || ||||| ||| | || || ||||| || | |||| | || || Sbjct 3319 CTTGGAGAAAATTTCTTATGCTGATATCATTGAAGTTGCAGATTTGGATTCGACTGCGCG 3378 Query 86018 AGGACAAGGAGGATTCGGGTCCACCGG 86044 || ||||||| ||||| ||||| || Sbjct 3379 CGGTGAAGGAGGTTTCGGCTCCACTGG 3405 >seq2395 Length=9075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 85838 TATCGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACT 85897 ||| |||||||| || || ||||||||||| ||||||||||||||||| | || || Sbjct 334 TATTGACGTGGGTGCGGGTGTCATCGACGCGGACTACCGCGGAAACGTAGGTGTTGTTCT 393 Query 85898 CTTCAACCACGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCAT 85957 || ||||| || || || || || | || | || || |||| ||| || || || || Sbjct 394 ATTTAACCATGGAGATGAAGACCTAGAAGTAAAACGCGGTGACAGGGTCGCGCAATTAAT 453 Query 85958 CTGTGAAAAAATCCACTATTCCGACATACAAGAAGTGACAACTCTGGACACCACCCAACG 86017 || || ||||| ||| | || || ||||| || | |||| | || || Sbjct 454 CTTGGAGAAAATTTCTTATGCTGATATCATTGAAGTTGCAGATTTGGATTCGACTGCGCG 513 Query 86018 AGGACAAGGAGGATTCGGGTCCACCGG 86044 || ||||||| ||||| ||||| || Sbjct 514 CGGTGAAGGAGGTTTCGGCTCCACTGG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462251869445200