Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4331 237 2e-57 seq15971 89.7 6e-13 >seq4331 Length=8668 Score = 237 bits (262), Expect = 2e-57 Identities = 366/519 (71%), Gaps = 5/519 (1%) Strand=Plus/Plus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 ||||||||||| || | | |||||| || ||||| ||||| | |||||| || ||| Sbjct 6752 ACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCGGGG 6811 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGG 145989 ||||| || | | ||||| ||| | ||| ||||| || |||||| | || | Sbjct 6812 TTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATGCAG 6871 Query 145990 TCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGC 146048 || ||||||||||| |||| |||| ||| || | | | | |||| ||||| | || Sbjct 6872 TCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTC-GGCGCGCATGTCCTCGTACTCCGC 6930 Query 146049 CCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC 146108 ||||||||||||||||||||||||||| || ||||| ||||| || ||| | |||| Sbjct 6931 CCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGTGCGA 6990 Query 146109 CAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCT 146168 ||| || | | ||||||| || || || ||||| ||||||| || | | | | | Sbjct 6991 CAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGTTCTT 7050 Query 146169 CGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGAC 146228 ||| |||||| || | || |||||| ||| || ||||||||| ||||| ||| || Sbjct 7051 GTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCGGCCAC 7110 Query 146229 CCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGC---CCCGCAGGGAGTA 146285 ||||||||||| | ||| || || || ||||||| | || | || |||||||| Sbjct 7111 GCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGGGAGCGCGCCGTCGCGAAGGGAGTA 7170 Query 146286 CTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCAC 146345 ||| ||||||| |||| ||||| ||||||||||||||||| | || Sbjct 7171 GCGCATCTGCACCCCGAACTTGGACTTCGTGCCGGTCCCCGTCCTGTCCCCCCTCTGGAC 7230 Query 146346 CCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 |||||| | | ||| || | | | ||| ||||||||| Sbjct 7231 GCCGTTCTCGATGATATCGCGGCAGATGTCGAGGTACTG 7269 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 145636 aTCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACG 145695 ||| | |||||||| || | ||| || | | |||||| ||||| | ||||| Sbjct 6311 ATCTTCAGCCTGGGGAATGCCCGAGGCTTTCGCTCCAGCTGTTCCTTCAATGCGTCCACA 6370 Query 145696 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCC 145755 ||||| ||||| || || ||||| || | ||||| ||||| || |||| | | || Sbjct 6371 TGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTGCGCCCG 6430 Query 145756 GTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCC 145815 |||| | ||| ||||||| ||||| |||| ||| ||||||||||| || || || Sbjct 6431 GTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGAACGCCG 6490 Query 145816 AGCCCCATGTC 145826 ||||||||||| Sbjct 6491 AGCCCCATGTC 6501 >seq15971 Length=7797 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 36763 GAGGGCTACCAGGGGGCCACGGTCATAGACCCC-TCGCCCGGGTTCTACAACACCCCGGT 36821 ||||| ||| ||||||| |||||| | |||||| || | | |||||| | |||| | Sbjct 3940 GAGGGGTACGAGGGGGCGACGGTCCTCGACCCCATCAAGCAG-TTCTACCAGGTCCCGAT 3998 Query 36822 GCTGGTGGTGGACTTTGCCAGCCTGTACCCCACCATCATCCAGGCCCACAACCTCTGCTA 36881 | | | ||||| || || |||||||| | |||||| |||||| ||||||||||||| Sbjct 3999 CGCGACGCTCGACTTCGCTAGTCTGTACCCGAGCATCATGCAGGCCTACAACCTCTGCTA 4058 Query 36882 CTCCACCATGATC 36894 ||| |||||| || Sbjct 4059 CTCGACCATGGTC 4071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589701422643680