Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq45459 235 6e-57 seq4998 183 3e-41 seq9453 138 1e-27 seq18597 107 2e-18 seq20946 86.0 6e-12 >seq45459 Length=4245 Score = 235 bits (260), Expect = 6e-57 Identities = 440/643 (68%), Gaps = 14/643 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | ||||||| | || ||| Sbjct 2717 ATATGGCAAATGTACAAGAAGGCAGAGGCATCATTCTGGACGGCCGAGGAGATTGATCTG 2776 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || ||||| | |||||||| |||||| ||||||| | ||||| || ||| Sbjct 2777 GCCGAGGACTTAAAGGACTGGGACGGCTTGACGAACAACGAAAGGCATTTTGTCTCCCAC 2836 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 | || ||||| ||||| || ||||| || ||||||||||| || | | ||| Sbjct 2837 ATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAACTTC 2896 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 || ||||| || |||||||| |||| |||||||| ||||| || ||| | || Sbjct 2897 GCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCCGTTGAA 2956 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAG 116932 ||| | ||| || | |||||| || |||||||| ||| | | | | || Sbjct 2957 AACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAGGCCGAC 3016 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 ||| || || | | |||||||||||||| |||||||||| | | ||||| | Sbjct 3017 AAGATGCACC---TCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAAT 3073 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| || ||| || | || | ||| | |||| ||||| | |||||| Sbjct 3074 TGGGCCCTTAAGTGGTGCGACTCGCGACATGCCTCTTTCGCGGAGCGGTGCATCGCCTTC 3133 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || |||||||||||| | ||||| || ||| |||||| || ||||||||||| Sbjct 3134 GCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAG 3193 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || || |||||||| || || |||| |||||||| || ||| | ||||| || ||| Sbjct 3194 CGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGACTG 3253 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA----GCGACCGAGCGCGGC 117228 || ||||||||||||||| | || | | | | ||||| | | | |||| || | Sbjct 3254 CACTGCGACTTTGCCTGTCTCCTTTACTCGAAACTGGTGAACAAGGTGCCCGAAAGCAG- 3312 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAG 117271 | |||| ||||| || ||| |||| |||| |||||| || Sbjct 3313 GATCGTC---GAGATTGTAACCCACGCTGTCGAGATCGAGAAG 3352 >seq4998 Length=959 Score = 183 bits (202), Expect = 3e-41 Identities = 396/589 (67%), Gaps = 14/589 (2%) Strand=Plus/Minus Query 116690 GACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATC 116749 || ||| || ||||| | |||||||| |||||| ||||||| | || || || Sbjct 954 GATCTGGCCGAGGACTTAAAGGACTGGGACGGCTTGACGAACAACGAAAGGCACTTTGTC 895 Query 116750 AAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809 ||| | || ||||| ||||| || ||||| || ||||||||||| || | | Sbjct 894 TCCCACATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGG 835 Query 116810 CGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869 ||||| ||||| || |||||||| |||| |||||||| ||||| || ||| Sbjct 834 AACTTCGCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCC 775 Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCT 116926 | || ||| | ||| || | |||||| || |||||||| ||| | | | Sbjct 774 GTTGAAAACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAG 715 Query 116927 TCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 | || ||| || || | | |||||||||||||| |||||||||| | | ||| Sbjct 714 GCCGACAAGATGCACC---TCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAG 658 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 || | ||||| || ||| || | || | ||| | |||| ||||| | Sbjct 657 GCGAATTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCTCTTTCGCGGAGCGGTGCATC 598 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 |||||||| |||||||||||| | ||||| || ||| |||||| || |||||| Sbjct 597 GCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTC 538 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || |||||||| || || |||| |||||||| || ||| | ||||| Sbjct 537 AAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAA 478 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA----GCGACCGAG 117222 || ||||| ||||||||||||||| | || | | | | ||||| | | | |||| Sbjct 477 GGACTGCACTGCGACTTTGCCTGTCTCCTTTACTCGAAACTGGTGAACAAGGTGCCCGAA 418 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAG 117271 || | | |||| ||||| || ||| |||| |||| |||||| || Sbjct 417 AGCAG-GATCGTC---GAGATTGTAACCCACGCTGTCGAGATCGAGAAG 373 >seq9453 Length=4450 Score = 138 bits (152), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGA 40772 || ||||||||||||||| |||| ||||| || | |||| | | |||| ||||| Sbjct 920 ACAGGCAAAACCATCACCCTCGATGTCGAGCCCTCGGACACGATCGACAACG-TCAAGAC 978 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||||||| |||| || || || || |||| ||||||||| Sbjct 979 CAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTGATCTTCGCGGGCAA 1038 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || |||||| ||||||||||||||||||||| | ||||| || Sbjct 1039 GCAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATCCAGAAGGAGTCGACGCTCCA 1098 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 || || | || | | ||||||||| Sbjct 1099 CCTCGTCCTCCGGCTCCGCGGCGGCGGC 1126 >seq18597 Length=5183 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || || || || || || |||||| | |||||||| | | | Sbjct 3303 TGCAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGG 3244 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| ||||| |||||| | || || Sbjct 3243 ACACGATCGACAACG-TCAAGACGAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAA 3185 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || |||| ||||||||| ||||||||| Sbjct 3184 CAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 3125 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 3124 ATCCAGAAGGAGTCGACCCTCCA 3102 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || |||||| | ||||| || | | Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| |||||||||||| | || || Sbjct 3016 GACACGATCGACAACG-TCAAGACGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 2958 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| || || ||||| || || | ||||||||| |||||||| Sbjct 2957 ACAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 2898 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 2897 CATCCAGAAGGAGTCGACCCTCCA 2874 >seq20946 Length=4204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| | ||||||| | |||||||| | | Sbjct 186 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGATCATCACCCTTGACGTCGACCCGTCG 127 Query 40750 GACAGCGTGCAA--ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | || ||| ||| |||||| || || | ||| | ||||||||||| | || | Sbjct 126 GAAA-CGATCAACAACG-TCAAGGCGAAGATCCAGGACGAGGAGGGCATCCCTCCTGATC 69 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | | | || || ||||| || |||| |||||||| ||||||| Sbjct 68 AACAGCGTCTGATTTTCACCGGGAAGCAGCTCGAGGACGGCCGCACCCTTTTGGACTACA 9 Query 40868 ACATCCAG 40875 || ||||| Sbjct 8 ACGTCCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514891443305920