Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq33104 104 4e-17 >seq33104 Length=5523 Score = 104 bits (114), Expect = 4e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 124594 CAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 ||| ||| |||||| ||| |||| ||| || || || ||||| ||||| || ||||| Sbjct 3086 CAAGTGACACAATTGACAATGTTAAGACA-AAGATCCAGGATAAGGAAGGCATTCCACCG 3144 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 |||||||| ||| | |||||||| ||||| || | |||||| | || ||| | ||| Sbjct 3145 GATCAACAGAGGTTGATTTTTGCGGGAAAGCAGCTGGAGGATGGCCGTACACTTTCTGAT 3204 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || || || | || |||| || ||| | ||||||||| Sbjct 3205 TATAATATCCAGAAGGAGTCGACGCTCCACCTGGTCTTGCGTCTCCGAGGTGGT 3258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754975416665600