Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18597 125 6e-24 seq9453 100 2e-16 seq18371 86.0 5e-12 seq10981 82.4 7e-11 >seq18597 Length=5183 Score = 125 bits (138), Expect = 6e-24 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 2867 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTC 2926 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 |||||| || || ||| | || |||||||| ||||| || || ||||||||||||| ||| Sbjct 2927 GAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 2986 Query 118648 TAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | | || || || || | |||| ||||||| ||| || || | ||| | ||| Sbjct 2987 GA--TCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTC 3044 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || ||||| |||||||| Sbjct 3045 TTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 118 bits (130), Expect = 9e-22 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 3095 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTC 3154 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 |||||| || || ||| | || |||||||| ||||| || || || |||||||||| ||| Sbjct 3155 GAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTG 3214 Query 118648 TAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | | || || || || | |||| ||||||| |||||| || | ||| | ||| Sbjct 3215 GA--TCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTC 3272 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || |||||||| || || || |||||||||| Sbjct 3273 TTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq9453 Length=4450 Score = 100 bits (110), Expect = 2e-16 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | || || ||||||||||| Sbjct 1099 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCGAGCTG 1040 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 || || ||| |||| |||||||| ||||| || || ||||||||||||| ||| | | Sbjct 1039 CTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGGA--TC 982 Query 118654 TTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || || | |||| ||||||| | |||||| |||| ||| | |||||||| Sbjct 981 TTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTTTTGCCT 922 Query 118713 GTC 118715 ||| Sbjct 921 GTC 919 >seq18371 Length=23815 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| |||| || || || || |||||||||||||| | ||||| ||| Sbjct 23788 CAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATC 23729 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| || |||||||| ||| |||| || | ||| ||||| || || || ||||||||||| Sbjct 23728 CTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTTGTC 23669 >seq10981 Length=11828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| |||| || || || || |||||||||||||| | ||||| ||| Sbjct 2388 CAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATC 2329 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| || || ||||| ||| |||| || | ||| ||||| || || || ||||||||||| Sbjct 2328 CTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGGATCCCCTCCTTGTC 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433561318321264