Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq25208 87.8 2e-12 seq704 87.8 2e-12 seq48370 86.0 7e-12 seq37901 86.0 7e-12 seq17180 86.0 7e-12 seq9453 86.0 7e-12 seq3857 86.0 7e-12 seq49845 84.2 2e-11 >seq25208 Length=4305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 880 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAGCCACTATACTATCA 821 Query 60134 AGGATTGA 60141 ||| ||| Sbjct 820 CGGACTGA 813 >seq704 Length=503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 356 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAGCCACTATACTATCA 297 Query 60134 AGGATT 60139 ||||| Sbjct 296 CGGATT 291 >seq48370 Length=2335 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 52 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAGCCACTATACTA 108 >seq37901 Length=489 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 309 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAGCCACTATACTA 365 >seq17180 Length=10606 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 254 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAGCCACTATACTA 198 >seq9453 Length=4450 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || ||||| |||| || |||||||| || ||||| Sbjct 1087 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAA 1028 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||| || || | || | || |||||||||| ||| || |||| ||| Sbjct 1027 GATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 969 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | |||||| | || ||||||| |||||||||||||| || Sbjct 968 TGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTTTTGCCTGT 920 >seq3857 Length=5926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 3226 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAGCCACTATACTA 3170 >seq49845 Length=4203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| | Sbjct 913 CAGGGAATCGAACCCTGGTCTCCCGCGTGGCAGGCGGGGATACTAGCCACTATACTATCA 972 Query 60134 AGGATT 60139 ||||| Sbjct 973 CGGATT 978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571453838233760