Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18597 100 2e-16 seq46929 91.5 1e-13 seq9453 87.8 1e-12 >seq18597 Length=5183 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| ||| | || || ||||| ||||||||||| || Sbjct 2849 TCCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 2908 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | |||||| || |||||||| || ||||| || || ||| Sbjct 2909 GAGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGG 2968 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | |||| || | || || || Sbjct 2969 GATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAAC 3028 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | ||||| || || ||||| || || || |||||||||||||| Sbjct 3029 GTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| ||||||||||| || || ||| |||| Sbjct 3093 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 3152 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || ||||| || || ||| | | ||||||||| Sbjct 3153 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCC 3212 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| || | || |||||||| | ||||| || Sbjct 3213 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTC 3272 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCA 34388 || ||||| || || || || || ||||||| Sbjct 3273 TTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq46929 Length=1090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGA 34228 || || | ||| |||| |||||||||||||| | ||| |||||||||||||| ||| | Sbjct 387 CGGAGACGCAGGACCAAATGTAAAGTACTTTCGTGCTGGATGTTGTAGTCGGATAGCGCA 328 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || || | || ||||| ||||| || ||||| |||| |||| |||| || | Sbjct 327 CGGCCATCTTCGAGTTGTTTGCCAGCGAATATCAGCCGTTGCTCGTCGGTGGGCTTGCCC 268 Query 34289 TCC 34291 ||| Sbjct 267 TCC 265 >seq9453 Length=4450 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| |||| || || ||||| | || || ||||| ||||||||||| || Sbjct 1122 CCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 1063 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || || ||||| || || ||| Sbjct 1062 AGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGG 1003 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | | ||||| Sbjct 1002 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACA 943 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||||||||| || Sbjct 942 TCGAGGGTGATGGTTTTGCCTGT 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322871615803520