Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq48315 215 1e-50 seq3460 84.2 5e-11 >seq48315 Length=10477 Score = 215 bits (238), Expect = 1e-50 Identities = 477/706 (68%), Gaps = 17/706 (2%) Strand=Plus/Plus Query 248742 CGATGACGTCCACACCGTCATTCAGGACAACGCGC-ACCTCCTGGACGGCGCGATTGACT 248800 ||| || |||||| ||||| | || |||| ||| || |||| |||||||| || | Sbjct 1590 CGAGGAGGTCCACTCCGTCGTCATGGCCAAC-CGCGACGTCCTCGACGGCGCCATCCTCC 1648 Query 248801 ACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCC 248860 ||| | || || |||| ||| | ||| | ||||| || || ||||| || || || | Sbjct 1649 ACGACCGCGACTTCGAGTTCGACTACTTCGGCTTCAAGACCCTCGAGAAGTCCTACCTGC 1708 Query 248861 TCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCG 248920 |||| || | ||| |||||| || || |||||| | | ||||| || || |||| Sbjct 1709 TCAAGATGCACGGCCAGATCGCCGAGCGTCCCCAGCACCTCCTCATGCGCGTCGCGGTCG 1768 Query 248921 GGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCT 248980 |||| |||| || ||||| ||||| || ||||||||||||| | | || | || | Sbjct 1769 GGATACACATGGGCGACATCGAGAGGGTCCTCGAGACGTACAACCTCCTCAGCCAGCGGT 1828 Query 248981 GGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCT 249040 | || || ||||| || ||||| ||||||||||| | || | ||| | || || | Sbjct 1829 TCTTCACCCACGCCACGCCCACGCTGTTCAACGCCGGGA-CGCC--CAACCCGCAGATGT 1885 Query 249041 CGTGCTTTCTTCTTGCCATGC----AAGACGACTCTGTCGACGGCATTTATGACACGCTT 249096 || || | |||| || | ||| || ||||| |||||||||| || |||||||| Sbjct 1886 CGAGC-TGCTTCCTGACGTGCGTCAGGGAGGACTCCATCGACGGCATATACGACACGCTC 1944 Query 249097 AAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATC 249156 || | ||| || || | |||||| || ||||| || ||| |||| ||| || Sbjct 1945 AAGAACTGCGCGGTCATCAGCAAGTACGCGGGGGGGATCGGCCTGTCCATCTCGAACGTC 2004 Query 249157 CGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCC 249214 || ||| | ||||||||| || || || || ||| | || ||||| ||| Sbjct 2005 CGCGCGTCCGCGTCGTACATCCGGGGCACGAACGGCACGTC--CAACGGCATCGTGCCCA 2062 Query 249215 TCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA---GGCCGGGCGCCGAAAGG 249271 | || || ||| | ||| || ||| | || |||| || |||| | |||| Sbjct 2063 TGCTCCGCGTCTTCAACAACACGGCGCGGTACGTCGACCAGGGGGGCGGGAAGAGGAAGG 2122 Query 249272 GGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGA 249331 | ||| |||| ||| | || ||||||||| || || || | ||||| ||| | | Sbjct 2123 GATCGATCGCGGCGTACATCGAGCCGTGGCACGCGGACATCTTCGCCTTCCTCGACCTTA 2182 Query 249332 AAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCT 249391 |||||| |||| |||||| | ||| ||| | ||||| ||||||| || ||| || Sbjct 2183 GGAAGAACCACGGGAACGAGATGGAGAGGGCGAGGGACCTGTTCTACGCGCTCTGGATCC 2242 Query 249392 CCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 | ||| |||||||| | ||| || | |||| || |||||||| Sbjct 2243 CGGACCTGTTCATGGAGAGGGTCCAGACGAACGGGGACTGGACGCT 2288 >seq3460 Length=4576 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 254212 TCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCC 254271 ||||||| | || || |||||||| ||| |||||||| |||||| |||| |||||| | Sbjct 3623 TCAAGCTTATAATACTCGACGAGGCCGACGCCATGACGAGCGACGCCCAGTTCGCCCTGC 3564 Query 254272 GCCGAACGATGGAGACGCACTCCGTTGTGACGC--GTTTTTGCCTGGTGTGCAACTACGT 254329 |||| || |||| |||| | | | |||| | || |||||| | ||||||||||| Sbjct 3563 GCCGGGTCATCGAGAAGCACAC-GAAGA-ACGCACGGTTCTGCCTGATATGCAACTACGT 3506 Query 254330 GTCGAAGATCATCGCCCCGCTG 254351 ||||||||| || ||||| Sbjct 3505 CAGCAAGATCATCCCCGCGCTG 3484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073066246592256