Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq18597 96.9 3e-15 seq18371 86.0 5e-12 >seq18597 Length=5183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || ||| |||| || Sbjct 3096 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 3155 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| |||||||| || || || | ||||||||||||| Sbjct 3156 AGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGG 3215 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| || || | ||| |||||||| Sbjct 3216 ATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTC 3275 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCA 45335 || ||||| ||||| || || || |||| Sbjct 3276 CCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq18371 Length=23815 Score = 86.0 bits (94), Expect = 5e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTC 45183 || ||||| || ||||| ||||||||||||||||| || | | || || || | || Sbjct 23787 AAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTG-CGTCCATC 23729 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||||||||||||||| |||| | |||||| || || || | ||||||||||| Sbjct 23728 CTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTTGTC 23669 Query 45244 C 45244 | Sbjct 23668 C 23668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394830156088732