Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq45459 118 1e-21 seq4998 118 1e-21 >seq45459 Length=4245 Score = 118 bits (130), Expect = 1e-21 Identities = 246/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || |||||||| || || ||||| | ||| | ||||| || || ||| Sbjct 3271 ACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAG 3212 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 || ||||| || || ||||| || ||||| || |||| |||| || ||||| |||| Sbjct 3211 ACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCGCTGAAGA 3153 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 |||| || || || || || ||||| || | ||| | || |||| |||| | Sbjct 3152 AAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCA-TGTCGCGAG 3094 Query 36336 TC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 36391 || ||||| | ||||||| ||||| || | || || |||| ||||| || || Sbjct 3093 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 3034 Query 36392 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTAT 36449 || | ||| | | || || || |||| ||||| || |||| || || || Sbjct 3033 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGA--AT 2976 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | | || ||||||||||||| ||| |||||||||||||||||||| || ||||||| Sbjct 2975 AGGTCTCACTGTGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 2916 >seq4998 Length=959 Score = 118 bits (130), Expect = 1e-21 Identities = 246/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || |||||||| || || ||||| | ||| | ||||| || || ||| Sbjct 454 ACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAG 513 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 || ||||| || || ||||| || ||||| || |||| |||| || ||||| |||| Sbjct 514 ACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCGCTGAAGA 572 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 |||| || || || || || ||||| || | ||| | || |||| |||| | Sbjct 573 AAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCA-TGTCGCGAG 631 Query 36336 TC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 36391 || ||||| | ||||||| ||||| || | || || |||| ||||| || || Sbjct 632 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 691 Query 36392 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTAT 36449 || | ||| | | || || || |||| ||||| || |||| || || || Sbjct 692 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGA--AT 749 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | | || ||||||||||||| ||| |||||||||||||||||||| || ||||||| Sbjct 750 AGGTCTCACTGTGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657754103373280