Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq4331 190 2e-43 seq15971 86.0 5e-12 >seq4331 Length=8668 Score = 190 bits (210), Expect = 2e-43 Identities = 342/490 (70%), Gaps = 15/490 (3%) Strand=Plus/Plus Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| |||||||| || | ||| || || || || |||||| | ||||| |||||| Sbjct 6752 ACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCGGGG 6811 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTG-GGGCCG--CCTGTTAAT-TAGATCCAC 21226 ||||| || |||| ||||| | ||||| | ||| | |||| | | | ||| || Sbjct 6812 TTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATGCA- 6870 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT-GTACT 21285 || ||||||||||||||||| |||| ||||| |||| || ||| ||||| Sbjct 6871 ---GTCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTCGGCG-CGCATGTCCTCGTACT 6926 Query 21286 CCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGT 21345 ||||||| || || |||||||||||||||||||||||||| || |||||||| ||||| Sbjct 6927 CCGCCCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGT 6986 Query 21346 CCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG- 21404 | | |||| ||| | | || |||| || |||| | ||||||| || | || | Sbjct 6987 GCGACAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGT 7046 Query 21405 CCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCC 21464 | | || | || ||| | | || ||||||||| || ||||| || | |||||| Sbjct 7047 TCTTGTCG-GCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCG 7105 Query 21465 ACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC---TCGTCCCTGAGG 21521 | ||||||||||| ||| | || || || | || || | | |||| | ||| Sbjct 7106 GCCACGCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGGGAGCGCGCCGTCGCGAAGG 7165 Query 21522 TTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581 || || ||| | ||||||| |||| | ||||| |||||||||||| ||||| Sbjct 7166 GAGTAGCGCATCTGCACCCCGAACTTGGACTTCGTGCCGGTCCCCGTCCTGTCCCCCCTC 7225 Query 21582 TGCACGCCGT 21591 || ||||||| Sbjct 7226 TGGACGCCGT 7235 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 || || ||||| |||||| |||||||| || | ||||| |||||||||||||| | Sbjct 6365 TCCACATGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTG 6424 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 | || ||||| | || | || | |||||||||||||| || ||||| || || Sbjct 6425 CGCCCGGTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGA 6484 Query 21051 ACCCCGAGGCCCATGTCGGC 21070 || ||||| ||||||||||| Sbjct 6485 ACGCCGAGCCCCATGTCGGC 6504 >seq15971 Length=7797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 15808 GGACAGGGGGGCTATCAGGGCGCGACGGTGATCAACCCCATTCCGGGGTTTTACGACGAG 15867 ||| | | ||| || |||| |||||||| || ||||||| | ||| ||| | | Sbjct 3934 GGAGACGAGGGGTACGAGGGGGCGACGGTCCTCGACCCCATCAAGCAGTTCTACCAGGTC 3993 Query 15868 CCGGTCCTGGTGGTCGATTTTGCCAGCCTGTACCCGAGCATCATCCAGGCGCACAACCTG 15927 ||| || | | |||| || || || ||||||||||||||||| ||||| ||||||| Sbjct 3994 CCGATCGCGACGCTCGACTTCGCTAGTCTGTACCCGAGCATCATGCAGGCCTACAACCTC 4053 Query 15928 TGCTACTCCACCATG 15942 |||||||| |||||| Sbjct 4054 TGCTACTCGACCATG 4068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427510673540160