Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq45459 120 4e-22 seq4998 114 2e-20 >seq45459 Length=4245 Score = 120 bits (132), Expect = 4e-22 Identities = 368/561 (66%), Gaps = 15/561 (3%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||||||||||| || || || | ||| | ||||| || || ||| Sbjct 3271 ACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAG 3212 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || || ||||| || ||||| || || | |||| || ||||| |||| Sbjct 3211 ACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCGCTGAAGA 3153 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242 | || || || || || || ||||| || | ||| | || |||| |||| | Sbjct 3152 AAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCA-TGTCGCGAG 3094 Query 42243 TC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 42298 || ||||| | ||||||| ||||| || | || || |||| || || ||||| Sbjct 3093 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 3034 Query 42299 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTAT 42356 || | ||| | | || || || |||| ||||| ||||||| || || || Sbjct 3033 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAG 2974 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 | ||| ||||||||||||| ||| || ||||||||||||||||| |||||||||| Sbjct 2973 GTCTCACTG--TGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 2916 Query 42417 TAACCTGTACTTCTGTACAAAATCGTT--CAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || || || || || ||| || || || ||||| ||||| |||||| Sbjct 2915 CGGATTGAACCTCGGTGGCGAA--GTTCCCACATAGGTTCTCGTTGACTATACCGTCAGA 2858 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 || || || || || | | || | ||||| |||||| || || | Sbjct 2857 CGCAGCGAAGAAGGCGAGGATGTGGGAGACAAAATGCCTTTCGTTGTTCGTCAAGCCGTC 2798 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| || || | || | | | ||| | || || ||||||| |||||||| ||||| Sbjct 2797 CCAGTCCTTTAAGTCCTCGGCCAGATCAATCTCCTCGGCCGTCCAGAATGATGCCTCTGC 2738 Query 42595 CTTTTTATACATATTCCAGAT 42615 ||| || ||||| | ||| || Sbjct 2737 CTTCTTGTACATTTGCCATAT 2717 >seq4998 Length=959 Score = 114 bits (126), Expect = 2e-20 Identities = 245/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||||||||||| || || || | ||| | ||||| || || ||| Sbjct 454 ACAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAG 513 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || || ||||| || ||||| || || | |||| || ||||| |||| Sbjct 514 ACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCGCTGAAGA 572 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242 | || || || || || || ||||| || | ||| | || |||| |||| | Sbjct 573 AAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCA-TGTCGCGAG 631 Query 42243 TC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 42298 || ||||| | ||||||| ||||| || | || || |||| || || ||||| Sbjct 632 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 691 Query 42299 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTAT 42356 || | ||| | | || || || |||| ||||| ||||||| || || || Sbjct 692 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAG 751 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 | ||| ||||||||||||| ||| || ||||||||||||||||| |||||||||| Sbjct 752 GTCTCACTG--TGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670712254797920