Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq45459 145 1e-29 seq4998 111 2e-19 seq4331 96.9 5e-15 seq48315 87.8 3e-12 seq17224 87.8 3e-12 >seq45459 Length=4245 Score = 145 bits (160), Expect = 1e-29 Identities = 385/572 (67%), Gaps = 21/572 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||||| ||| ||| | |||||| Sbjct 2717 ATATGGCAAATGTACAAGAAGGCAGAGGCATCATTCTGGACGGCCGAGGAGATTGATCTG 2776 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | | || ||||| | ||||| | | || | | ||| | || Sbjct 2777 GCCGAGGACTTAAAGGACTGGGACG---GCTTGACGAACAACGAAAGGCATTTTGTCTCC 2833 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT--GTTGACAC 125196 ||||| | |||||||| || | || || || || |||||||| || || || | || Sbjct 2834 CACATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAAC 2893 Query 125197 GATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||| | ||| | | || | | |||| ||| || |||||||| ||||| Sbjct 2894 --TTCGCCACCGAGGTT-CAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCC 2950 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 |||| ||| | ||| || | || || ||||| |||| |||||| || | | Sbjct 2951 GTTGAAAACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAG 3010 Query 125316 CAACGTAAACA--CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || || | || ||| | ||||| ||||| || ||||||| | | ||||||| Sbjct 3011 GC-CGACAAGATGCAC-CTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGG 3068 Query 125374 CTCAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 | | |||| || |||| ||| | ||||| | || | | ||| || | | Sbjct 3069 CGAATTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCT-CTTTCGCGGAGCGGTGCATC 3127 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||||||||| |||||||| ||||| ||| | || |||| ||||||| ||||| Sbjct 3128 GCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCG-CCATCTTCTGGCT 3186 Query 125492 CAAGAAGCGCGGACTCATGCCCGG--ACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||| || |||||||| || ||| | || |||||| |||| || || ||| Sbjct 3187 CAAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCA--AACGAGCTTATTTCCCGCGAC 3244 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 || || || ||||| ||||||||| ||| || Sbjct 3245 GAAGGACTGCACTGCGACTTTGCCTGTCTCCT 3276 >seq4998 Length=959 Score = 111 bits (122), Expect = 2e-19 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||| | ||||| ||||| || ||||||| | | |||||||| | |||| || | Sbjct 699 CTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAG 640 Query 125391 TGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||| ||| | ||||| | || | | ||| || | | || ||||||||||| || Sbjct 639 TGGTGCGACTCGCGACATGCCT-CTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGA 581 Query 125450 GGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 |||||| ||||| ||| | || |||| ||||||| |||||||||||||| || |||| Sbjct 580 GGGCATTTTCTTCAGCGGATCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGAGGGCTCA 522 Query 125509 TGCCCGG--ACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 |||| || ||| | || |||||| |||| || || ||||| || || ||||| || Sbjct 521 TGCCTGGTCTCTGTTTCTCA--AACGAGCTTATTTCCCGCGACGAAGGACTGCACTGCGA 464 Query 125567 CTTTGCCATTCTACT 125581 ||||||| ||| || Sbjct 463 CTTTGCCTGTCTCCT 449 >seq4331 Length=8668 Score = 96.9 bits (106), Expect = 5e-15 Identities = 249/366 (68%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 69928 GGGCGTCATCGAGGAGCTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAG 69987 |||||| |||||||||| | ||| | | || || || || || || || ||||| | Sbjct 7114 GGGCGTGGCCGAGGAGCTCCTCTGGTTCGTCTCGGGCTCCACGAACGCGAACGAGCTC-G 7056 Query 69988 CCGA-AAGGGTGTACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTC 70045 |||| ||| ||||||| ||| ||| ||| | || | ||| | || |||| Sbjct 7055 CCGACAAGAACATACACATATGGGACGGGAACGGCTCGCGC-GAGTTCCTCGACTCGCGG 6997 Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105 ||| | | || | | |||||||| || ||||| |||||||| ||||||||||||||| Sbjct 6996 GGCCTGTCGCACCGCGAGGAGGGCGACCTCGGGCCGGTGTACGGGTTCCAGTGGAGGCAC 6937 Query 70106 TCGGGCACCAAGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-AT 70163 | || | |||| | ||| |||| | | ||||| ||| |||| || || || | Sbjct 6936 TTCGGGGCGGAGTACGAGGACATGCGCG-CCGACTACAAGGGGAAGGGGGTGGACCAGCT 6878 Query 70164 TGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCT 70223 || ||| ||| |||| ||| || ||| || ||| | |||||||| |||| Sbjct 6877 GGCCGAC-TGCATCGACAAGATCAGGAACAACCCGGAGGATCGCAGGATCGTCATGTCGG 6819 Query 70224 CATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAG 70282 | ||||| || || || || || | ||||| || || ||||| ||| |||| | |||| Sbjct 6818 CTTGGAACCCCGCCGACCTGGACAAGATGGCGCTGCCCCCGTGCCACATGTTCTG-TCAG 6760 Query 70283 TTTTAC 70288 || ||| Sbjct 6759 TTCTAC 6754 >seq48315 Length=10477 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 97203 CAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAAC 97262 ||||| ||||| || || || ||||| ||||||||||| | || |||| ||| Sbjct 2529 CAGGTCGAGACCGGCACGCCCTACATGCTCTACAAGGACCACTGCAACGGCAAGTCGAAC 2588 Query 97263 CAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || | || | ||||| |||||| ||||||| || ||||| || ||||| |||||| | Sbjct 2589 CAGCAGAACCTCGGCACGATCAAGTGCTCCAACCTCTGCACCGAGATTGTCGAGTACACG 2648 Query 97323 TCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | || ||||||| || |||||| ||||| || || || ||||||| || Sbjct 2649 TGCCCCGACGAGATCGCCGTTTGCAACCTGGCGTCCATCTCCCTCTCCAAGTTCGT 2704 >seq17224 Length=2745 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 ||||||||||||||||| || ||| || || |||||||||||||| || ||||||| Sbjct 1388 AATCCGTGCGTCAGGTGCCCGCCGGACGGGAGGTCGAGTCCCATGATCCTGTCGTGCGGG 1447 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563 || | | | ||||| || || |||||||| ||| |||||||| || || || | Sbjct 1448 TTGAGCAGGGCCGTGTAGACCGCGAAGTTGGCGGGCGACCCCGAGTAGGGCTGGACGTTC 1507 Query 127564 ACTCCCCA 127571 || ||||| Sbjct 1508 ACCCCCCA 1515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740587775189920