Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq16886 136 2e-27 >seq16886 Length=2726 Score = 136 bits (150), Expect = 2e-27 Identities = 289/422 (68%), Gaps = 16/422 (4%) Strand=Plus/Plus Query 66694 CGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGT 66753 ||| ||||| | || ||| ||| || ||| || || ||||||| ||| || ||||| Sbjct 1395 CGGGTCTATGACACTTGACACCGCCCTTGGC---GGAGGATACCCGAAGGGTCGAGTGGT 1451 Query 66754 GGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAA 66813 ||||||||||| || ||||| ||||| || | || || |||||| ||| |||| | Sbjct 1452 CGAAATCTACGGACCCGAATCCTCAGGTAAAACCACGCTCGCTCTCCATGCGCTGGCGGA 1511 Query 66814 TGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCCGA 66873 ||||||| | ||| || | || || | | || || |||||| | ||||| ||| Sbjct 1512 GGCGCAGATGAACGGAGGTATTGCAGCGTTTGTGGATGCAGAGCACGCGCTGGATCCCTC 1571 Query 66874 GTACGCCAAGGCGCTC--GGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 66931 || || || ||||| || |||||| | ||||||||| |||| ||||| || | Sbjct 1572 CTATGC--AGCCGCTCTGGGAGTGGACGTGGACAACCTCCTGGTTTCGCAGCCTGATTCC 1629 Query 66932 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGT--CAAG-TCTGGCG-AGCTGTCCAT 66987 || || ||| || || || || |||| | || ||| |||| | | ||| ||| Sbjct 1630 GGAGAAATGGCGCTTGACATAGTGGACCAGTTGGTGAGAAGCTCTGCAGTTGATGT-CAT 1688 Query 66988 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 67047 ||| || | | | ||||||||||| || || |||||||| || || ||||| || | Sbjct 1689 CGTGGTGGATAGC---GTGGCGGCCCTTGTCCCCCGCGCCGAACTGGAGGGCGAAATGAG 1745 Query 67048 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 67107 |||| || || || || || || | | ||||| |||| ||||| || |||| || Sbjct 1746 TGACATGCAAGTAGGACTCCAAGCAAGGTTGATGTCCAAGGCAATGCGAAAAATCAC-GG 1804 Query 67108 CA 67109 || Sbjct 1805 CA 1806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242703770469104