Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq33104 114 3e-20 seq18371 100 7e-16 seq18597 95.1 3e-14 seq10981 95.1 3e-14 >seq33104 Length=5523 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| |||||||| ||||| || || | || || || || || ||||| Sbjct 3227 GTCGACTCCTTCTGGATATTATAATCAGAAAGTGTACGGCCATCCTCCAGCTGCTTTCCC 3168 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | |||||||||||| || || || ||||| |||||||| ||||||| || Sbjct 3167 GCAAAAATCAACCTCTGTTGATCCGGTGGAATGCCTTCCTTATCCTGGATCTTTGTCTTA 3108 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || | || || || || || || || || || || ||| || Sbjct 3107 ACATTGTCAATTGTGTCACTTGGCTCGACATCGAGCGTTATCGTCCTA 3060 >seq18371 Length=23815 Score = 100 bits (110), Expect = 7e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || |||| || | || || || ||||||||||| Sbjct 23772 GTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATCCTCAAGTTGTTTTCCG 23713 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||||||||| || || || || || || ||||| ||||||| || Sbjct 23712 GCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTTGTCCTGGATCTTTGTCTTG 23653 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || | || ||||| || || || || || || || ||| Sbjct 23652 ACGTTGTCAATTGTGTCGCTTGGCTCGACATCGAGCGTGATCGTC 23608 >seq18597 Length=5183 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || || || Sbjct 2880 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTCCCG 2939 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||| || || || || || ||||| ||||| | || Sbjct 2940 GCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTG 2999 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || || || || || || ||||| || || || || Sbjct 3000 ACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTC 3059 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 3060 TTAACAAAGATCTGCAT 3076 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 3108 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 3167 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||| || || || || || ||||| ||||| | || Sbjct 3168 GCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTCGTCTTG 3227 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || || || || || || ||||| || || || || Sbjct 3228 ACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTC 3287 Query 104543 TTTACAAATATCTGCA 104558 || || || ||||||| Sbjct 3288 TTGACGAAAATCTGCA 3303 >seq10981 Length=11828 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || |||| || | || || || ||||| ||||| Sbjct 2372 GTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATCCTCAAGTTGCTTTCCG 2313 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||||||||| || || || || || || ||||| ||||||| || Sbjct 2312 GCGAAGATCAGTCTCTGTTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGTCTTG 2253 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || | || ||||| || || || || || || || ||| Sbjct 2252 ACGTTGTCAATTGTGTCGCTTGGCTCGACATCGAGCGTGATCGTC 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150647626355536