Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq45535 95.1 1e-14 >seq45535 Length=6392 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||| ||| |||||||| || |||| || ||||| ||| || | | |||| Sbjct 3459 CACGCCGGTGCTTCCGAATCCTCCCTCGCCCCTCTCCGTCTCGGTGAGCTCCTCGACCTG 3518 Query 5560 TTCCACATCGGGGAAC--GCAGCGC-GCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGT 5616 ||| |||||| | || | ||||| || |||||||| || ||||| |||| Sbjct 3519 ---CACGGCGGGGACCATGCTTATCTGCTCGAGTATGAGCTGCGCGATCCGGTC-CCCGA 3574 Query 5617 CTTT-ACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 | || | ||| || | || || |||||||| || |||||||| |||||||| |||| Sbjct 3575 CGGCCACGTTGAAGTCTTCTTGTCCAAAGTTGAAGAGGACCACGCCGACGTTGCCCCGGT 3634 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCG 5731 |||||||||| | || || ||||| |||||||| | | ||| || || || ||| Sbjct 3635 AGTCGGCGTCGACGACCCCGGCGCCGACGTCGATCATCTTCTTCACGGCGAGTCCG 3690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429787660371104