Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq4331 170 1e-37 >seq4331 Length=8668 Score = 170 bits (188), Expect = 1e-37 Identities = 250/354 (71%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 25609 CTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTA 25668 || ||||| |||||||| | ||| |||||| || || || || | ||| ||| Sbjct 6749 CTTACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCG 6808 Query 25669 GGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCG 25728 |||||||| || ||| || ||| | | || || ||||||| |||||| || | Sbjct 6809 GGGTTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATG 6868 Query 25729 GTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 25788 || |||||| ||||||||| ||||| |||||| || | ||||||| |||||| Sbjct 6869 CAGTCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTCGGCGCGCATGTCCTCGTACTCC 6928 Query 25789 GCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGC 25848 || ||||| | |||||||||||||||||||||||| || ||||| || || || | |||| Sbjct 6929 GCCCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGTGC 6988 Query 25849 TCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCC 25908 | ||||| | || | || || | || || || ||||||| || | || | Sbjct 6989 GACAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGTTC 7048 Query 25909 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 || |||| |||||| || | ||| ||||| || ||||||||| || |||||| Sbjct 7049 TTGTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCC 7102 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCT 25433 || ||| |||| |||| || | | |||| | ||| ||||| ||||| | || Sbjct 6308 TTCATCTTCAGCCTGGGGAATGCCCGAGGCTTTCGCTCCAGCTGTTCCTTCAATGCGTCC 6367 Query 25434 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGC 25493 || || | |||||| || || |||||||| | ||||||||||| |||||||| | || Sbjct 6368 ACATGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTGCGC 6427 Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 ||||| || | |||| ||||| || ||||| ||| || ||||| || || || Sbjct 6428 CCGGTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGAACG 6487 Query 25554 CCGAACCCCATGTC 25567 |||| ||||||||| Sbjct 6488 CCGAGCCCCATGTC 6501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339926630929116