Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20960 161 2e-35 seq18823 161 2e-35 seq15199 161 2e-35 seq9868 158 2e-34 seq35304 152 8e-33 seq18030 149 1e-31 seq5768 143 4e-30 seq6802 118 2e-22 seq14350 109 9e-20 >seq20960 Length=7526 Score = 161 bits (178), Expect = 2e-35 Identities = 182/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 3409 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3351 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 3350 TCCGCCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 3291 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 3290 CCCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACCG 3231 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| |||||||||||||| ||||||| ||||||| || |||| || || | Sbjct 3230 AGCACGCCCGCCGTAAGACTGTCACGGCCATGGACGTCGTCTACGCCCTGAAGCGACAGG 3171 Query 16671 G 16671 | Sbjct 3170 G 3170 >seq18823 Length=10442 Score = 161 bits (178), Expect = 2e-35 Identities = 182/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 4534 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 4592 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 4593 TCCGCCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 4652 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 4653 CCCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACCG 4712 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| |||||||||||||| ||||||| ||||||| || |||| || || | Sbjct 4713 AGCACGCCCGCCGTAAGACTGTCACGGCCATGGACGTCGTCTACGCCCTGAAGCGACAGG 4772 Query 16671 G 16671 | Sbjct 4773 G 4773 >seq15199 Length=5857 Score = 161 bits (178), Expect = 2e-35 Identities = 182/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1933 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1991 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || ||||||||| |||| || | |||| || |||| Sbjct 1992 TCCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 2051 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| |||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 2052 CTCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACCG 2111 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| ||||||| || |||| || || | Sbjct 2112 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTCTACGCCCTGAAGCGACAGG 2171 Query 16671 G 16671 | Sbjct 2172 G 2172 >seq9868 Length=5253 Score = 158 bits (174), Expect = 2e-34 Identities = 181/241 (75%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || || ||||| || ||||||||||| || | Sbjct 545 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAATATCCAGGGCATCACCAAGCCCGCCA 603 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || ||||||||| |||| || | |||| || |||| Sbjct 604 TCCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 663 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| |||||||| ||| ||| |||| ||| | || || |||| Sbjct 664 CTCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACTTACACCG 723 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| ||||||| || ||||| || || | Sbjct 724 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTCTACGCCTTGAAGCGACAGG 783 Query 16671 G 16671 | Sbjct 784 G 784 >seq35304 Length=3499 Score = 152 bits (168), Expect = 8e-33 Identities = 180/241 (75%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1205 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 1146 TCCGCCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 1087 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 1086 CCCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACCG 1027 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| ||||||| || |||| || || | Sbjct 1026 AGCACGCCCGCCGCAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTGAAGCGACAGG 967 Query 16671 G 16671 | Sbjct 966 G 966 >seq18030 Length=3063 Score = 149 bits (164), Expect = 1e-31 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1869 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1811 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 1810 TCCGCCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 1751 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 1750 CCCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACCG 1691 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| | ||||| || |||| || || | Sbjct 1690 AGCACGCCCGCCGCAAGACCGTCACTGCCATGGACGTTGTCTACGCCCTGAAGCGACAGG 1631 Query 16671 G 16671 | Sbjct 1630 G 1630 >seq5768 Length=1922 Score = 143 bits (158), Expect = 4e-30 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || || ||||| || ||||||||||| || | Sbjct 864 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAATATCCAGGGCATCACCAAGCCCGCCA 806 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 805 TCCGCCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 746 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| ||| | || ||| |||| Sbjct 745 CCCGCGGCGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCCGTCACCTACACCG 686 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| ||||||| || |||| || || | Sbjct 685 AGCACGCCCGCCGCAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTGAAGCGACAGG 626 Query 16671 G 16671 | Sbjct 625 G 625 >seq6802 Length=407 Score = 118 bits (130), Expect = 2e-22 Identities = 120/154 (78%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 154 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 96 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || ||||||||| |||| || | |||| || |||| Sbjct 95 TCCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 36 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | || | ||| |||||||| ||| ||| Sbjct 35 CTCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGT 2 >seq14350 Length=912 Score = 109 bits (120), Expect = 9e-20 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 156 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 98 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 97 TCCGCCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 38 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 || | || | ||| |||||||| ||| ||| || Sbjct 37 CCCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79028669088156