Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq50892 589 6e-164 seq43102 589 6e-164 >seq50892 Length=141790 Score = 589 bits (652), Expect = 6e-164 Identities = 742/1014 (73%), Gaps = 4/1014 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | |||||||| || ||||| | || | ||||||||||| | ||| ||||| Sbjct 86522 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 86463 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 | ||| || | |||||| |||| || || |||| ||||||||||| || || |||||| Sbjct 86462 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 86403 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| ||||| | || || ||| | ||||| ||||| || || || Sbjct 86402 ATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCA 86343 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || ||||| | || || || || || || || ||||||| || || ||||||||||| Sbjct 86342 GGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCA 86283 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | | |||||||||||||||||||| ||||| || ||| | | || || |||||| Sbjct 86282 GCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTC 86223 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| || ||| ||| ||| | | |||||| || ||| | ||||| ||| Sbjct 86222 TTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 86163 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||||| | || ||| || |||||||| ||| || || | Sbjct 86162 CGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTA 86103 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 || |||||| | || ||||| ||| ||||||||||||| | ||||||||||||||| Sbjct 86102 GTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 86043 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 |||||||| ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||| Sbjct 86042 TTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATG 85983 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| ||||||||||| ||| | ||| |||||||||||| || || Sbjct 85982 GCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTA 85923 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 ||||| | ||| ||||||||||| | | ||| ||||| || || || ||| Sbjct 85922 ACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTC 85863 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||||||||| |||||||| | || || Sbjct 85862 GGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATC 85803 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||| ||||| ||||| || || ||| ||||||| ||||| | ||| | || Sbjct 85802 TTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCA 85743 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || | || || ||| | || || ||||| || | || ||||| |||||| | || ||| Sbjct 85742 GTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGT 85683 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197 || ||||| ||||| || || ||||| | |||| | | || | | ||||||||||| Sbjct 85682 TTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAAC-ACATGGGCTGA 85624 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257 | | | || | ||| | | || | ||||| |||||||| || || || || ||||| Sbjct 85623 TATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTT 85564 Query 20258 CCCACTTGATTTAGCTTCGGCTGAGTCAACAAACA-TTGCACTAACAGCTCCAG 20310 |||| | ||||||||||| | ||| | | | || |||| | |||||||||| Sbjct 85563 CCCATTAGATTTAGCTTCAGGTGA-TGTATTACCAGTTGCTTTCACAGCTCCAG 85511 Score = 589 bits (652), Expect = 6e-164 Identities = 742/1014 (73%), Gaps = 4/1014 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | |||||||| || ||||| | || | ||||||||||| | ||| ||||| Sbjct 125567 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 125626 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 | ||| || | |||||| |||| || || |||| ||||||||||| || || |||||| Sbjct 125627 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 125686 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| ||||| | || || ||| | ||||| ||||| || || || Sbjct 125687 ATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCA 125746 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || ||||| | || || || || || || || ||||||| || || ||||||||||| Sbjct 125747 GGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCA 125806 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | | |||||||||||||||||||| ||||| || ||| | | || || |||||| Sbjct 125807 GCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTC 125866 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| || ||| ||| ||| | | |||||| || ||| | ||||| ||| Sbjct 125867 TTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 125926 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||||| | || ||| || |||||||| ||| || || | Sbjct 125927 CGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTA 125986 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 || |||||| | || ||||| ||| ||||||||||||| | ||||||||||||||| Sbjct 125987 GTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 126046 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 |||||||| ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||| Sbjct 126047 TTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATG 126106 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| ||||||||||| ||| | ||| |||||||||||| || || Sbjct 126107 GCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTA 126166 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 ||||| | ||| ||||||||||| | | ||| ||||| || || || ||| Sbjct 126167 ACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTC 126226 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||||||||| |||||||| | || || Sbjct 126227 GGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATC 126286 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||| ||||| ||||| || || ||| ||||||| ||||| | ||| | || Sbjct 126287 TTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCA 126346 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || | || || ||| | || || ||||| || | || ||||| |||||| | || ||| Sbjct 126347 GTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGT 126406 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197 || ||||| ||||| || || ||||| | |||| | | || | | ||||||||||| Sbjct 126407 TTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAAC-ACATGGGCTGA 126465 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257 | | | || | ||| | | || | ||||| |||||||| || || || || ||||| Sbjct 126466 TATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTT 126525 Query 20258 CCCACTTGATTTAGCTTCGGCTGAGTCAACAAACA-TTGCACTAACAGCTCCAG 20310 |||| | ||||||||||| | ||| | | | || |||| | |||||||||| Sbjct 126526 CCCATTAGATTTAGCTTCAGGTGA-TGTATTACCAGTTGCTTTCACAGCTCCAG 126578 >seq43102 Length=56976 Score = 589 bits (652), Expect = 6e-164 Identities = 742/1014 (73%), Gaps = 4/1014 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | |||||||| || ||||| | || | ||||||||||| | ||| ||||| Sbjct 27233 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 27174 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 | ||| || | |||||| |||| || || |||| ||||||||||| || || |||||| Sbjct 27173 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 27114 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| ||||| | || || ||| | ||||| ||||| || || || Sbjct 27113 ATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCA 27054 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || ||||| | || || || || || || || ||||||| || || ||||||||||| Sbjct 27053 GGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCA 26994 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | | |||||||||||||||||||| ||||| || ||| | | || || |||||| Sbjct 26993 GCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTC 26934 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| || ||| ||| ||| | | |||||| || ||| | ||||| ||| Sbjct 26933 TTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 26874 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||||| | || ||| || |||||||| ||| || || | Sbjct 26873 CGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTA 26814 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 || |||||| | || ||||| ||| ||||||||||||| | ||||||||||||||| Sbjct 26813 GTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 26754 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 |||||||| ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||| Sbjct 26753 TTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATG 26694 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| ||||||||||| ||| | ||| |||||||||||| || || Sbjct 26693 GCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTA 26634 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 ||||| | ||| ||||||||||| | | ||| ||||| || || || ||| Sbjct 26633 ACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTC 26574 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||||||||| |||||||| | || || Sbjct 26573 GGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATC 26514 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||| ||||| ||||| || || ||| ||||||| ||||| | ||| | || Sbjct 26513 TTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCA 26454 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || | || || ||| | || || ||||| || | || ||||| |||||| | || ||| Sbjct 26453 GTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGT 26394 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197 || ||||| ||||| || || ||||| | |||| | | || | | ||||||||||| Sbjct 26393 TTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAAC-ACATGGGCTGA 26335 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257 | | | || | ||| | | || | ||||| |||||||| || || || || ||||| Sbjct 26334 TATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTT 26275 Query 20258 CCCACTTGATTTAGCTTCGGCTGAGTCAACAAACA-TTGCACTAACAGCTCCAG 20310 |||| | ||||||||||| | ||| | | | || |||| | |||||||||| Sbjct 26274 CCCATTAGATTTAGCTTCAGGTGA-TGTATTACCAGTTGCTTTCACAGCTCCAG 26222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144354307802352