Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq50892 724 0.0 seq43102 724 0.0 >seq50892 Length=141790 Score = 724 bits (802), Expect = 0.0 Identities = 727/944 (77%), Gaps = 0/944 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||||||| | | ||| | || | | || | || || | || || ||| | Sbjct 86489 GGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATC 86430 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || || |||||||| ||||| || |||||||| || ||||||||||||||||| ||||| Sbjct 86429 GCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCT 86370 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | || ||||||||||||||||| ||||||||| | || ||||||||| || ||| Sbjct 86369 TTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGT 86310 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || |||||||||||||| | ||||||||||| | ||||| |||||| Sbjct 86309 ATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGT 86250 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| || | | || |||||| | | || | || |||||||| | | Sbjct 86249 CCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAA 86190 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 |||||| | |||||||||||||||||||||||||||| || || | || || || Sbjct 86189 TGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCA 86130 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| ||||||||| || |||||| | || |||||| ||||||| ||||| ||||| || Sbjct 86129 GTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGAT 86070 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || || ||||||||||| ||||||||||| ||||| Sbjct 86069 GGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACAC 86010 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||||| | |||||||||||||| ||||| |||||||| ||| | |||||||| | ||| Sbjct 86009 AACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTA 85950 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 ||| ||||||||||||||| | || || ||| | ||||||||||| |||| Sbjct 85949 TTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAAC 85890 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || ||| ||||| |||||||| ||||| ||||||||||| || || |||||||| ||| Sbjct 85889 GAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 85830 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 ||||| || ||||| ||| | | |||||||| || || |||||||||||| | | Sbjct 85829 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCT 85770 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||| | || | |||||| ||| | || | |||||||| ||||||||||| Sbjct 85769 TTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATT 85710 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | ||||||||||||||| |||| || ||||||||||||||||| ||||||||| | | Sbjct 85709 AGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAA 85650 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTT 212511 ||| ||| || || |||| |||| | ||||| | || | | ||||||||||| Sbjct 85649 GGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTA 85590 Query 212512 ATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATC 212555 ||||||||| | || || |||||||||||| | || ||||| || Sbjct 85589 ATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTC 85546 Score = 724 bits (802), Expect = 0.0 Identities = 727/944 (77%), Gaps = 0/944 (0%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||||||| | | ||| | || | | || | || || | || || ||| | Sbjct 125600 GGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATC 125659 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || || |||||||| ||||| || |||||||| || ||||||||||||||||| ||||| Sbjct 125660 GCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCT 125719 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | || ||||||||||||||||| ||||||||| | || ||||||||| || ||| Sbjct 125720 TTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGT 125779 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || |||||||||||||| | ||||||||||| | ||||| |||||| Sbjct 125780 ATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGT 125839 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| || | | || |||||| | | || | || |||||||| | | Sbjct 125840 CCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAA 125899 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 |||||| | |||||||||||||||||||||||||||| || || | || || || Sbjct 125900 TGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCA 125959 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| ||||||||| || |||||| | || |||||| ||||||| ||||| ||||| || Sbjct 125960 GTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGAT 126019 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || || ||||||||||| ||||||||||| ||||| Sbjct 126020 GGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACAC 126079 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||||| | |||||||||||||| ||||| |||||||| ||| | |||||||| | ||| Sbjct 126080 AACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTA 126139 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 ||| ||||||||||||||| | || || ||| | ||||||||||| |||| Sbjct 126140 TTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAAC 126199 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || ||| ||||| |||||||| ||||| ||||||||||| || || |||||||| ||| Sbjct 126200 GAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 126259 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 ||||| || ||||| ||| | | |||||||| || || |||||||||||| | | Sbjct 126260 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCT 126319 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||| | || | |||||| ||| | || | |||||||| ||||||||||| Sbjct 126320 TTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATT 126379 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | ||||||||||||||| |||| || ||||||||||||||||| ||||||||| | | Sbjct 126380 AGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAA 126439 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTT 212511 ||| ||| || || |||| |||| | ||||| | || | | ||||||||||| Sbjct 126440 GGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTA 126499 Query 212512 ATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATC 212555 ||||||||| | || || |||||||||||| | || ||||| || Sbjct 126500 ATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTC 126543 >seq43102 Length=56976 Score = 724 bits (802), Expect = 0.0 Identities = 727/944 (77%), Gaps = 0/944 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||||||| | | ||| | || | | || | || || | || || ||| | Sbjct 27200 GGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATC 27141 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || || |||||||| ||||| || |||||||| || ||||||||||||||||| ||||| Sbjct 27140 GCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCT 27081 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | || ||||||||||||||||| ||||||||| | || ||||||||| || ||| Sbjct 27080 TTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGT 27021 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || |||||||||||||| | ||||||||||| | ||||| |||||| Sbjct 27020 ATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGT 26961 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| || | | || |||||| | | || | || |||||||| | | Sbjct 26960 CCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAA 26901 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 |||||| | |||||||||||||||||||||||||||| || || | || || || Sbjct 26900 TGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCA 26841 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| ||||||||| || |||||| | || |||||| ||||||| ||||| ||||| || Sbjct 26840 GTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGAT 26781 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || || ||||||||||| ||||||||||| ||||| Sbjct 26780 GGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACAC 26721 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||||| | |||||||||||||| ||||| |||||||| ||| | |||||||| | ||| Sbjct 26720 AACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTA 26661 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 ||| ||||||||||||||| | || || ||| | ||||||||||| |||| Sbjct 26660 TTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAAC 26601 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || ||| ||||| |||||||| ||||| ||||||||||| || || |||||||| ||| Sbjct 26600 GAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 26541 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 ||||| || ||||| ||| | | |||||||| || || |||||||||||| | | Sbjct 26540 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCT 26481 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||| | || | |||||| ||| | || | |||||||| ||||||||||| Sbjct 26480 TTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATT 26421 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | ||||||||||||||| |||| || ||||||||||||||||| ||||||||| | | Sbjct 26420 AGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAA 26361 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTT 212511 ||| ||| || || |||| |||| | ||||| | || | | ||||||||||| Sbjct 26360 GGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTA 26301 Query 212512 ATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATC 212555 ||||||||| | || || |||||||||||| | || ||||| || Sbjct 26300 ATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTC 26257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807041473759520