Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq24354 127 5e-24 seq48315 91.5 4e-13 >seq24354 Length=8886 Score = 127 bits (140), Expect = 5e-24 Identities = 357/540 (66%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 363759 CTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCA 363818 |||||| || || ||||||||||| || || || ||| || | || ||||| || Sbjct 6702 CTCGAACGGTCTCGTTCCCATGCTCCGAGTCTTCGACTCGACGTCACATTATGTCGATCA 6761 Query 363819 GGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATAT 363878 |||||| || |||||| || || || || || || ||||||| || ||||| || Sbjct 6762 GGGTGGCGGGAAGCGCCCCGGCGCCTTCGCCATATACGTCGAGCCGTGGCACGCCGACAT 6821 Query 363879 TTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCT 363938 ||| || | || | ||||| |||||| ||||| ||||| ||| ||| | |||| Sbjct 6822 TTTCGACGTGCTCAACCTCCGAAAAAACCATGGAAAGGAGGAGCAGCGCGCAAGGAATCT 6881 Query 363939 GTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATT 363997 |||||| | | ||||| | |||| || ||||| ||||| |||| ||| || || Sbjct 6882 GTTCTACGGGTTATGGGTCCCCGACCTCTTCATGAAACGCGTCGAGG-AGGACGGAGTTT 6940 Query 363998 GGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATG 364057 || || | ||||| ||||| ||||| || || ||| || || | | || Sbjct 6941 GGAGCCTGATGTGCCCTCACGAGTGTCCTGGCCTCGGCGAGTGCCACGGCGAACAGTTTG 7000 Query 364058 TTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA-ATTCCCGCACAG 364116 || ||||| |||||||| |||||||| | ||| | | || || | || | | Sbjct 7001 AGAAGCTCTACGAGAAGTATGAGTCGGAGGG-ACGGCACAAGCGCCAGATACGAGCGCGG 7059 Query 364117 AAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTAC 364176 |||| ||| ||||| | || |||| || ||||| || | || || | | || Sbjct 7060 CAGCTCTGGGCGGCCATACTCGACGCGCAAATAGAGACGGGCAACCCGTACCTCCTTTAT 7119 Query 364177 AAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAA 364235 || || | ||| ||| | ||| ||| ||||| |||| || || || ||| ||||| Sbjct 7120 AAGGACGC-TGCTAACGGGAAGAGCAATCAGCAAAACCTAGGCACGATACAGAGCAGCAA 7178 Query 364236 CCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||||| || ||||| || | ||||| || ||| ||||| || |||||||| Sbjct 7179 TCTATGCACAGAGATCATACAGTACACAAACGAGGAGGAGGTGGCCGTTTGCAACCTTGC 7238 >seq48315 Length=10477 Score = 91.5 bits (100), Expect = 4e-13 Identities = 283/432 (66%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||||||||| || ||| ||| || || || | || || |||||||| Sbjct 1831 TTCACCCACGCCACGCCCACGCTGTTCAACGCCGGGACGCCCAACCCGCAGATGTCGAGC 1890 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||| || |||||||| || || | ||||| || ||||| Sbjct 1891 TGCTTCCTGACGTGCGTCAGGGAGGACTCCATCGACGGCATATACGACACGCTCAAGAAC 1950 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || | || |||| | || || || || || | || ||| || || || || Sbjct 1951 TGCGCGGTCATCAGCAAGTACGCGGGGGGGATCGGCCTGTCCATCTCGAACGTCCGCGCG 2010 Query 363727 -CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | || |||| || ||||| || || || || | || |||||||| || Sbjct 2011 TCCGCGTCGT-ACATCCGGGGCACGAACGGCACGTCCAACGGCATCGTGCCCATGCTCCG 2069 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| || ||| |||||||||||||||| || || ||| | || || || | Sbjct 2070 CGTCTTCAACAACACGGCGCGGTACGTCGACCAGGGGGGCGGGAAGAGGAAGGGATCGAT 2129 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 || ||| ||||||| || || || || || | || || || || |||| || Sbjct 2130 CGCGGCGTACATCGAGCCGTGGCACGCGGACATCTTCGCCTTCCTCGACCTTAGGAAGAA 2189 Query 363905 ACACGGGAA-AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 |||||||| ||| | | | | || | || |||||||| || || ||| | | ||| Sbjct 2190 CCACGGGAACGAGATGGA--GAGGGCGAGGGACCTGTTCTACGCGCTCTGGATCCCGGAC 2247 Query 363964 CATTTTATGAAG 363975 | || ||| || Sbjct 2248 CTGTTCATGGAG 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302503743397544