Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10981 96.9 3e-15 seq18371 91.5 1e-13 >seq10981 Length=11828 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| || |||| |||||| | | |||||| || || | ||||| |||||| | Sbjct 2210 CGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGATCCAGG 2269 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || || || || || ||||||||||||||||| | || ||| |||||||| || | Sbjct 2270 ACAAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACTTGAGG 2329 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| | | | | ||||| |||||||| || ||||| || | ||||| || || Sbjct 2330 ATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTT 2387 >seq18371 Length=23815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| || |||| |||||| | | |||||| || || | ||||| |||||| | Sbjct 23610 CGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGATCCAGG 23669 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || || || || || ||||||||||||||||| | || ||| || ||||| || | Sbjct 23670 ACAAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACTTGAGG 23729 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| | | | | ||||| |||||||| || ||||| || | ||||| || || Sbjct 23730 ATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTT 23787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429669333808260