Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48315 134 1e-26 seq18597 123 2e-23 seq24354 116 3e-21 seq9453 98.7 9e-16 >seq48315 Length=10477 Score = 134 bits (148), Expect = 1e-26 Identities = 462/708 (65%), Gaps = 23/708 (3%) Strand=Plus/Minus Query 145841 CCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGG 145900 ||||| | ||||| ||| ||||||| ||| ||| ||| || |||| | || Sbjct 2372 CCCTCGGCCTCGTACTTCTCGTAGAGCGCCTTGAACTCGGCGCCCCAGCACGTGTCGAGC 2313 Query 145901 CCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATA 145960 || |||| ||| || ||||| |||| ||| | ||||| | | ||| | |||||| Sbjct 2312 CCCTTGCACTCGTTCGGGCACATGAGCGTCCAGTCCCCGTTCGTCTGGACCCTCTCCATG 2253 Query 145961 AACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTG-CAATCCTCAGCACC 146019 |||| || || | ||| |||||||| | || ||| | ||| | | ||| || | || Sbjct 2252 AACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTCGCCCTCTCCATC-TC-GTTCC 2195 Query 146020 CATGTTTCGCTTC--AAATT--AAGCACACTATAGATGTCCGCGTGCCACGGTTCAATAT 146075 | || ||| ||| || | | | | | | ||||||||||||||||||| || || | Sbjct 2194 CGTGGTTC--TTCCTAAGGTCGAGGAAGGCGA-AGATGTCCGCGTGCCACGGCTCGATGT 2138 Query 146076 AGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGT 146132 | | |||| | ||| || | || ||| |||||||| |||| || || |||||| Sbjct 2137 ACGCCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGT 2078 Query 146133 TAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT----AGAGTTTATT 146188 | |||||||| | ||||||| ||| |||| ||| ||||||||| | | || Sbjct 2077 TGAAGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGGATGTACG 2018 Query 146189 CTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGAT 146248 | | |||| | || || ||| | || ||||| || || |||||||| Sbjct 2017 ACGCGGACGCGCGGACGTTCGAGATGGA----CAGGCCGATCCCCCCCGCGTACTTGCTG 1962 Query 146249 ATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCG 146308 || | ||||||| |||||| ||||| |||||||| ||| || | | || Sbjct 1961 ATGACCGCGCAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTCCCTGACGCAC 1902 Query 146309 AGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTC 146368 ||| ||||| ||||||||| | |||||||| || ||||| ||| || | Sbjct 1901 GTCAGGAAGCAGCTCGACATCTGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTG 1842 Query 146369 GCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGA-TAGCGTCTTGAATGTC 146427 ||||| || || | |||| | | ||||| |||| | | ||| | ||||| Sbjct 1841 GCGTGGGTGAAGAACCGCTGGCTGAGGAGGTTGTACGTCTCGAGGACCCTCTCG-ATGTC 1783 Query 146428 GTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTG 146487 | | || || || | |||||||||||||| | ||| ||||| ||||| || | || Sbjct 1782 GCCCATGTGTATCCCGACCGCGACGCGCATGAGGAGGTGCTGGGGACGCTCGGCGATCTG 1723 Query 146488 ATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAA 146535 || ||||| | || ||| ||||| ||||| ||| | ||||| Sbjct 1722 GCCGTGCATCTTGAGCAGGTAGGACTTCTCGAGGGTCTTGAAGCCGAA 1675 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 145621 GACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGAT 145680 || || ||| ||||||| || ||||| || |||| |||| | |||| | || || Sbjct 2693 GAGGGAGATGGACGCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTGTACTCGACAAT 2634 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 ||||| ||| | ||| || ||||| || || || || ||||| || || | ||| Sbjct 2633 CTCGGTGCAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCCGTT 2574 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 ||| |||||||||||||||||| || ||| ||||| ||||| Sbjct 2573 GCAGTGGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGACCTG 2529 >seq18597 Length=5183 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||||||||| || |||||||| || Sbjct 3078 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 3137 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| | || | |||||| || || || ||| Sbjct 3138 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 3197 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | | ||||| | Sbjct 3198 ATACCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACG 3257 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || | ||| | || || ||||| || || || ||||||||||||| Sbjct 3258 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||||||||| || |||||||| || Sbjct 2850 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2909 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | |||||| || || || ||| Sbjct 2910 AGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 2969 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | | ||| | | Sbjct 2970 ATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACG 3029 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| || || || || || |||||||| Sbjct 3030 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 >seq24354 Length=8886 Score = 116 bits (128), Expect = 3e-21 Identities = 349/524 (67%), Gaps = 21/524 (4%) Strand=Plus/Minus Query 145640 TTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 || ||||| ||| |||||| ||| |||| |||| |||||| | ||| | |||||| Sbjct 7232 TTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGTGCATAGATTGCTG 7173 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAG 145758 | | || || || || ||||||||||| || |||| ||| ||| |||||||| || || Sbjct 7172 CTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCA-GCGTCCTTATAAAG 7114 Query 145759 CATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGC 145816 | |||||| ||| ||||| | |||| || | || | | || || | | || Sbjct 7113 GAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGA--GTATGGCCGCCCAGAGCTGCCGC 7056 Query 145817 GCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAAC 145876 || || | ||| ||| || || ||||| || || ||| |||||||| ||||||| Sbjct 7055 GCTCGTATCTGGCGCTTGTGCCGTCCCTCCGACTCATACTTCTCGTAGAGCTTCTCAAAC 6996 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 |||| ||| ||| ||||| ||||||| || || |||||||| ||| || Sbjct 6995 TGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGGCACATCAGGCTCCAAACT 6936 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCA-AGTC 145995 |||| | | |||||| | ||| || | || || ||||| | | |||| | || | || Sbjct 6935 CCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAACCCGTAGAACAGATTC 6876 Query 145996 ---GCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTC--AAATTAAGCACACTATAG 146050 |||||| ||| ||||| ||||| || ||| | || ||||| | Sbjct 6875 CTTGCGCGC--TGC--TCCTC-CTTTCCATGGTT-TTTTCGGAGGTTGAGCACGTCGAAA 6822 Query 146051 ATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCC 146107 ||||| ||||||||||| || | || | ||||| ||| || || || ||||||| Sbjct 6821 ATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTTCCCGCCACCC 6762 Query 146108 TGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 || || || | | || | | || ||||| || | |||||| Sbjct 6761 TGATCGACATAATGTGACGTCGAGTCGAAGACTCGGAGCATGGG 6718 >seq9453 Length=4450 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | || || || | || | ||||||||||| || |||||||| || Sbjct 1123 GCCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 1064 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| ||||||||||| ||| |||| | |||||| || ||||| || Sbjct 1063 GAGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGG 1004 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || || | || ||||| Sbjct 1003 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGAC 944 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | |||||| || || Sbjct 943 ATCGAGGGTGATGGTTTTGCCTGT 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471712529057280