Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq45459 86.0 7e-12 >seq45459 Length=4245 Score = 86.0 bits (94), Expect = 7e-12 Identities = 243/366 (66%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA-ATC 93342 ||||||| || ||||||| || || || | || ||||| ||||| | |||| ||| Sbjct 3078 GCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTGAGGAGGTGCATC 3019 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | | ||| || || |||||||| ||||| | || ||||| | ||| || | Sbjct 3018 TTG-TCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGTCTCACTGTGAAT 2960 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC--T 93460 || || | |||||||| |||||||||||||| || || || | | || || || | Sbjct 2959 GTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGGCGGATTGAACCTCGGT 2900 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 | ||| || | | || || || ||||||||||| || || || || || || || Sbjct 2899 GGCGAAGTTCCCAC--ATAGGTTCTCGTTGACTATACCGTCAGACGCAGCGAAGAAGGCG 2842 Query 93521 AATATATGCTTTATAAAATGTTTCTC-ATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 | || || | |||||| | || | || | |||| ||||| || || || Sbjct 2841 AGGATGTGGGAGACAAAATGCCTTTCGTTGTTCGTCAAGC-CGTCCCAGTCCTTTAAGTC 2783 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639 | | ||||| | || ||| | ||||| || ||||| ||||| || |||||||| | Sbjct 2782 CTCGGCCAGATCAATCTCCTCGGCCGTCCAGAATGATGCCTCTGCCTTCTTGTACATTTG 2723 Query 93640 CCATAT 93645 |||||| Sbjct 2722 CCATAT 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556506553002080