Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18597 120 3e-22 seq18371 104 2e-17 seq10981 98.7 8e-16 seq9453 82.4 6e-11 >seq18597 Length=5183 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || | ||||| || ||| |||| ||||| || || | | Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| || || || |||||| Sbjct 3016 GACACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 2957 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | |||||| ||||||| |||| || |||||| Sbjct 2956 CAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAAC 2897 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 2896 ATCCAGAAGGAGTCGACCCTCCACTTGGT 2868 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| ||||| || || || | ||||| || ||| |||| ||||| || || | | | Sbjct 3303 TGCAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGG 3244 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | ||| | |||| || || || |||||||||||||| || || ||||||| Sbjct 3243 ACACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAAC 3184 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | ||||| || || ||||| || ||| | ||||| ||||||| |||| || ||||||| Sbjct 3183 AGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACA 3124 Query 22400 TTCAAAAAGAATCCACCATACATTTAGT 22427 | || || || || ||| | || || || Sbjct 3123 TCCAGAAGGAGTCGACCCTCCACTTGGT 3096 >seq18371 Length=23815 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22252 ACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAA 22311 ||| |||| || || || || | | ||| || | ||| | |||| ||| || || Sbjct 23609 ACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGATCCAG 23668 Query 22312 GACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAG 22371 ||||||||||| || || || |||||||| | || || || ||||| ||||| | ||| Sbjct 23669 GACAAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACTTGAG 23728 Query 22372 GATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| |||||| | || |||||||||||||| || ||||| || | ||||| || ||| Sbjct 23729 GATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTTG 23788 Query 22432 CG 22433 || Sbjct 23789 CG 23790 >seq10981 Length=11828 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22252 ACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAA 22311 ||| |||| || || || || | | ||| || | ||| | |||| ||| || || Sbjct 2209 ACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGATCCAG 2268 Query 22312 GACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAG 22371 ||||||||||| || || || |||||||| | || || || ||||| || || | ||| Sbjct 2269 GACAAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACTTGAG 2328 Query 22372 GATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| |||||| | || |||||||||||||| || ||||| || | ||||| || ||| Sbjct 2329 GATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTTG 2388 Query 22432 CG 22433 || Sbjct 2389 CG 2390 >seq9453 Length=4450 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| |||| || || || || || | || || | ||| | |||| Sbjct 920 ACAGGCAAAACCATCACCCTCGATGTCGAGCCCTCGGACACGATCGACAACGTCAAGACC 979 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || |||||||| ||||| || || || ||||| Sbjct 980 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTGATCTTCGCGGGCAAG 1039 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| || ||| |||| || |||||||| || || || || || Sbjct 1040 CAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATCCAGAAGGAGTCGAC 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419467665281980